Tc10v2_t012780.1

Overview
NameTc10v2_t012780.1
Unique NameTc10v2_t012780.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length915
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
ProductE3 ubiquitin-protein ligase SINAT5
NoteE3 ubiquitin-protein ligase SINAT5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587322
GenbankXM_007011039.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g012780Tc10v2_g012780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p012780.1Tc10v2_p012780.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto510560auto510560Theobroma cacaoexon
exon-auto510561auto510561Theobroma cacaoexon
exon-auto510562auto510562Theobroma cacaoexon
exon-auto510563auto510563Theobroma cacaoexon
exon-auto510564auto510564Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto510565auto510565Theobroma cacaoCDS
CDS-auto510566auto510566Theobroma cacaoCDS
CDS-auto510567auto510567Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t012780.1 ID=Tc10v2_t012780.1|Name=Tc10v2_t012780.1|organism=Theobroma cacao|type=mRNA|length=915bp
ATGGCATCTGGGAATCCATTTTTTGATGAGTTGCGGAGCAAGCCTGAGGT
TATTGATCCTCCACAAAATGAAGACATTATTGATAGTGAATCTGTGAATG
ATCCTACTCAAGCTGCTATAAAACCTAATGTGACTGTGTCTAGCAGTGTT
CGTGAGCTGTTAGAGTGCCCTGTGTGCTTAAATGCAATGTACCCGCCAAT
TCATCAGTGTTCAAATGGACACACATTGTGTTCTGGTTGCAAGCCTAGGG
TGCACAACCGGTGCCCCACATGTAGGCATGAACTTGGTAATATTAGGTGT
CTTGCATTGGAGAAGGTTGCTGCATCTCTTGAGCTTCCCTGTAAATATCA
GAGTTTTGGGTGCATTGGCATATATCCATATTACAGCAAGCTAAAACATG
AGTCCCAATGTTCTTATAGACCATATAGCTGCCCCTATGCTGGGTCTGAA
TGCACAGTCATTGGTGATATTCCTTATCTTGTGGCCCATCTCAAAGATGA
TCATAAAGTTGACATGCACAATGGCAGCACCTTCAACCATCGTTATGTCA
AATCAAATCCACACGAGGTTGAGAATGCTACATGGATGCTAACGGTTTTC
AGTTGCTTTGGCCAGTACTTTTGCCTGCACTTTGAAGCATTCCAGCTTGG
GATGGCTCCTGTTTATATAGCATTCTTGCGGTTTATGGGTGACGATAATG
AGGCAAAGAACTATAGCTACAGTCTCGAGGTGGGTGGGAATGGGAGGAAG
ATGACTTGGCAAGGGGTGCCCAGGAGCATAAGGGACAGTCACCGGAAGGT
TCGTGACAGTTTTGATGGTCTCATCATCCAACGAAACATGGCTTTGTTCT
TCTCAGGGGGAGACCGGAAAGAATTGAAGCTTAGAGTGACAGGAAGGATT
TGGAAAGAACAGTGA
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protein sequence of Tc10v2_p012780.1

>Tc10v2_p012780.1 ID=Tc10v2_p012780.1|Name=Tc10v2_p012780.1|organism=Theobroma cacao|type=polypeptide|length=305bp
MASGNPFFDELRSKPEVIDPPQNEDIIDSESVNDPTQAAIKPNVTVSSSV
RELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRC
LALEKVAASLELPCKYQSFGCIGIYPYYSKLKHESQCSYRPYSCPYAGSE
CTVIGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVF
SCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRK
MTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRI
WKEQ*
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