Tc10v2_t012460.2

Overview
NameTc10v2_t012460.2
Unique NameTc10v2_t012460.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1962
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productflowering time control protein FY, transcript variant X2
NoteFlowering time control protein FY
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587290
GenbankXM_018129508.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g012460Tc10v2_g012460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p012460.2Tc10v2_p012460.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto510218auto510218Theobroma cacaoexon
exon-auto510219auto510219Theobroma cacaoexon
exon-auto510220auto510220Theobroma cacaoexon
exon-auto510221auto510221Theobroma cacaoexon
exon-auto510222auto510222Theobroma cacaoexon
exon-auto510223auto510223Theobroma cacaoexon
exon-auto510224auto510224Theobroma cacaoexon
exon-auto510225auto510225Theobroma cacaoexon
exon-auto510226auto510226Theobroma cacaoexon
exon-auto510227auto510227Theobroma cacaoexon
exon-auto510228auto510228Theobroma cacaoexon
exon-auto510229auto510229Theobroma cacaoexon
exon-auto510230auto510230Theobroma cacaoexon
exon-auto510231auto510231Theobroma cacaoexon
exon-auto510232auto510232Theobroma cacaoexon
exon-auto510233auto510233Theobroma cacaoexon
exon-auto510234auto510234Theobroma cacaoexon
exon-auto510235auto510235Theobroma cacaoexon
exon-auto510236auto510236Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto510237auto510237Theobroma cacaoCDS
CDS-auto510238auto510238Theobroma cacaoCDS
CDS-auto510239auto510239Theobroma cacaoCDS
CDS-auto510240auto510240Theobroma cacaoCDS
CDS-auto510241auto510241Theobroma cacaoCDS
CDS-auto510242auto510242Theobroma cacaoCDS
CDS-auto510243auto510243Theobroma cacaoCDS
CDS-auto510244auto510244Theobroma cacaoCDS
CDS-auto510245auto510245Theobroma cacaoCDS
CDS-auto510246auto510246Theobroma cacaoCDS
CDS-auto510247auto510247Theobroma cacaoCDS
CDS-auto510248auto510248Theobroma cacaoCDS
CDS-auto510249auto510249Theobroma cacaoCDS
CDS-auto510250auto510250Theobroma cacaoCDS
CDS-auto510251auto510251Theobroma cacaoCDS
CDS-auto510252auto510252Theobroma cacaoCDS
CDS-auto510253auto510253Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t012460.2 ID=Tc10v2_t012460.2|Name=Tc10v2_t012460.2|organism=Theobroma cacao|type=mRNA|length=1962bp
ATGAGAAAGCTGACCCAAAGGAGAGCTGTTGATTATACAAGCACTGTTGT
GCGATATATGCAGATTCGCATGTGGCAACGAGATTCACGGGACAGGACAG
TATTGCAGCCTACTCCAGCAGCAGCAATTGATGTGTTGCCCACAGCTGCC
TATATAGATAATCCATCCACCAGCTTTGCTGCCAAATTTGTTCATACATC
TCTAAACAAAAATCGGTGTTCAATAAATCGTGTTTTGTGGACTCCCACGG
GCAGACGTCTCATCACAGGTTCTCAGAGTGGGGAATTTACTCTATGGAAT
GGACAGTCATTTAATTTTGAAATGATTCTTCAGGCCCATGATCAAGCTAT
CAGGTCTATGGTATGGAGTCACAATGACAACTGGATGGTTTCTGGTGATG
ATGGGGGTGCAATAAAGTATTGGCAGAATAACATGAATAATGTTAAGTTC
AATAAATCTGCTCACAAAGAATCAGTTCGTGACTTAAGTTTCTGTAGGAC
AGATTTAAAGTTTTGTTCCTGTTCTGATGACACTACTGTAAAAGTGTGGG
ACTTTGCCCGGTGCCAGGAGGAGCGTTCTTTAACTGGCCATGGTTGGGAT
GTGAAAAGTGTTGATTGGCACCCTACAAAATCCTTACTGGTTTCAGGTGG
AAAAGACAACCTCGTGAAACTTTGGGATGCTAAGACAGGGAGAGAGCTTT
GCTCATTTCATGGCCACAAAAACACAGTACTTTGTGTCAAATGGAACCAA
AATGGTAATTGGGTGTTGACTGCTGCAAAGGATCAAATCATCAAGCTTTA
TGACATCAGGGCTATGAAGGAGCTTGAATCTTTCCGAGGCCACCGAAAGG
ATGTGACTGCATTGGCTTGGCACCCATTCCATGAAGAATACTTTGTCAGT
GGGAGTTTTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCC
CCAGGTTGAAATTCCCAATGCCCATGATAATAGCGTGTGGGATATTGCCT
GGCATCCTATTGGATATCTTCTATGCAGTGGTAGCAATGATCACACGACA
AAGTTTTGGTGCAGAAATAGGCCTGGAGATACTGCTCGTGATAAATTTAG
CATGGGTCAGAACCAAGGCTATGGTGAGCAAAACCCTGCACTAGCTGGTC
GTATGCCTGGTAATTTTGCAGCACCTGAAGGTCCAACAACTCCGGGACCA
TATGCTGCTGGATTGACTCGAAATGAGGGAACAATTCCCGGTGTTGGAGT
TCCGATGCCATTATCAGTTCCAACTCTTGATGGATCTGCTCAGGGGGACC
AAAAGCAGCCTCTTCCAGGTTCCATGCCTTTTGGAGCTCCACCTCTTCCT
CCCGGTCCACATCCATCTCTTCTTGTTGCCAATCAGCAGCAGGGATATCA
ACAAAATCCTCAACAGATGCAACAACAGCAAATGCCTCCTATGCAAATGG
CACCTCCAAATATGTCACAGCTACAGCCTCCATCTCATATGCCCCTGCTT
CCACATCCTCATTTACAACGCCCTCCACCGCAAATGCCTCCAATTGGTAT
GCCTTCACCTGTCCCATCCTCAATGCCAGGATCTTTGCCTCCACCTTCAT
CAATGCCAACATCACATCAAATGCCAATGCCCGGTCCAATGGGTATGCAA
GGTACAATGAATCAGATGCCTCCTCCAATGCCACAAGGCCATTTTATGGG
CATGAATCCAATGCACTCAGGATCCCTGCCGAACAGTGGTGCCCCTACAG
TTGGAGGTTTTCCAAATGGTATGCAAAATATGCAAGGACCAGCAAATGCG
GGTGGAGGCCAAATGTATCCACAGGGTGGTGCATTCAATCGTGCACAGGG
TGGACAGATGCCAATGATGCCAGGGTTCAATCCTTACCAGTCTGGTGGTC
AGTCTGGTCTGCCGCCTCCACCACCACCAGGTCCCCCACCTCATGGTCAA
ACACCGCAGTAG
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protein sequence of Tc10v2_p012460.2

>Tc10v2_p012460.2 ID=Tc10v2_p012460.2|Name=Tc10v2_p012460.2|organism=Theobroma cacao|type=polypeptide|length=654bp
MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDVLPTAA
YIDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN
GQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKF
NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD
VKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQ
NGNWVLTAAKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS
GSFDGSIFHWLVGHETPQVEIPNAHDNSVWDIAWHPIGYLLCSGSNDHTT
KFWCRNRPGDTARDKFSMGQNQGYGEQNPALAGRMPGNFAAPEGPTTPGP
YAAGLTRNEGTIPGVGVPMPLSVPTLDGSAQGDQKQPLPGSMPFGAPPLP
PGPHPSLLVANQQQGYQQNPQQMQQQQMPPMQMAPPNMSQLQPPSHMPLL
PHPHLQRPPPQMPPIGMPSPVPSSMPGSLPPPSSMPTSHQMPMPGPMGMQ
GTMNQMPPPMPQGHFMGMNPMHSGSLPNSGAPTVGGFPNGMQNMQGPANA
GGGQMYPQGGAFNRAQGGQMPMMPGFNPYQSGGQSGLPPPPPPGPPPHGQ
TPQ*
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