Tc10v2_t011950.3

Overview
NameTc10v2_t011950.3
Unique NameTc10v2_t011950.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1107
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productuncharacterized LOC18587202, transcript variant X5
NoteUncharacterized protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587202
GenbankXM_018129693.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g011950Tc10v2_g011950Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p011950.3Tc10v2_p011950.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto509120auto509120Theobroma cacaoexon
exon-auto509121auto509121Theobroma cacaoexon
exon-auto509122auto509122Theobroma cacaoexon
exon-auto509123auto509123Theobroma cacaoexon
exon-auto509124auto509124Theobroma cacaoexon
exon-auto509125auto509125Theobroma cacaoexon
exon-auto509126auto509126Theobroma cacaoexon
exon-auto509127auto509127Theobroma cacaoexon
exon-auto509128auto509128Theobroma cacaoexon
exon-auto509129auto509129Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto509130auto509130Theobroma cacaoCDS
CDS-auto509131auto509131Theobroma cacaoCDS
CDS-auto509132auto509132Theobroma cacaoCDS
CDS-auto509133auto509133Theobroma cacaoCDS
CDS-auto509134auto509134Theobroma cacaoCDS
CDS-auto509135auto509135Theobroma cacaoCDS
CDS-auto509136auto509136Theobroma cacaoCDS
CDS-auto509137auto509137Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t011950.3 ID=Tc10v2_t011950.3|Name=Tc10v2_t011950.3|organism=Theobroma cacao|type=mRNA|length=1107bp
ATGATAGTGAGAAAGAACATGGGACGTTTGTCACCACTCCTTCTTGTTAC
ATTAGTTCTTGGCTTTTGCTTTGCAACATATAATCTGGTAACAATGGTAA
TGCACAATAGATCTATTTCAAAATGGAAAGTCAACGACTCCAATGGTGGA
ATATTTTTTGATCCTGTCATTGAGATGCCTGAAAATGTGAAGAAACCAAA
CAACGCCAAACAGCCTTTCCATGTTGCCTTAACAGCTACGGATGCTCCAT
ACAGTAAATGGCAGTGTCGCGTGATGTACTATTGGTATAAAAAGCAGAAG
GACTTGCCTGGGTCAGAGATGGGAGGTTTCACACGTGTTTTGCACTCTGG
AAGTCCTGACAACTTGGTAGATGAGATTCCTACCGTTATAGTTGATCCTC
TTCCAGCAGGGCTGGATCGGGGATACATTGTCTTAAATAGGCCATGGGCT
TTTGTGCAGTGGCTGGAAAAGGCTACAATTGAGGAAGAATATATATTGAT
GGCAGAGCCTGATCACATATTTATCCGTCCCCTGCCTAATCTGGGGCATG
GAGGATACCCAGCTGCCTTTCCCTTTTTCTACATTAAGCCGGCTCAGAAT
GAAAAATTGTTAAGGAAGTTTTACCCAGAGGAGATGGGACCTGTGACAAA
TATTGATCCAATTGGCAATTCACCTGTCATAATCAAGAAGGATTTACTGG
AAAAGATTGCTCCTACTTGGATGAATGTTTCCTTAAAAATGAAGAATGAC
CCAGAGACCGATAAAGCTTTTGGATGGGTGCTAGAAATGTATGCTTATGC
TGTGGCATCAGCTTTGCATGGTGTGCAACATATTCTTCGGAAGGACTTCA
TGCTGCAGCCCCCATGGGATTTGGAAACTGGGAAAAAGTTCATAATTCAT
TACACCTATGGATGTGACTACAACATGAAGGGTGAGTTGACATATGGTAA
AATTGGTGAGTGGCGATTTGACAAGAGATCATATCTACGTGGCCCACCTC
CGCGAAATCTCTCCTTGCCTCCTCCAGGGGTCCCTGAAAGTGTGGTGACC
CTTGTCAAGATGGTGAATGAAGCAACGGCTAACATCGGCAACTGGGATAC
AGAATAA
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protein sequence of Tc10v2_p011950.3

>Tc10v2_p011950.3 ID=Tc10v2_p011950.3|Name=Tc10v2_p011950.3|organism=Theobroma cacao|type=polypeptide|length=369bp
MIVRKNMGRLSPLLLVTLVLGFCFATYNLVTMVMHNRSISKWKVNDSNGG
IFFDPVIEMPENVKKPNNAKQPFHVALTATDAPYSKWQCRVMYYWYKKQK
DLPGSEMGGFTRVLHSGSPDNLVDEIPTVIVDPLPAGLDRGYIVLNRPWA
FVQWLEKATIEEEYILMAEPDHIFIRPLPNLGHGGYPAAFPFFYIKPAQN
EKLLRKFYPEEMGPVTNIDPIGNSPVIIKKDLLEKIAPTWMNVSLKMKND
PETDKAFGWVLEMYAYAVASALHGVQHILRKDFMLQPPWDLETGKKFIIH
YTYGCDYNMKGELTYGKIGEWRFDKRSYLRGPPPRNLSLPPPGVPESVVT
LVKMVNEATANIGNWDTE*
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