Tc10v2_t011120.4

Overview
NameTc10v2_t011120.4
Unique NameTc10v2_t011120.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1026
Properties
Property NameValue
NoteProbable choline kinase 2
Model evidenceSupporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productprobable choline kinase 2, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587073
GenbankXM_007010732.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g011120Tc10v2_g011120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p011120.4Tc10v2_p011120.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto507382auto507382Theobroma cacaoexon
exon-auto507383auto507383Theobroma cacaoexon
exon-auto507384auto507384Theobroma cacaoexon
exon-auto507385auto507385Theobroma cacaoexon
exon-auto507386auto507386Theobroma cacaoexon
exon-auto507387auto507387Theobroma cacaoexon
exon-auto507388auto507388Theobroma cacaoexon
exon-auto507389auto507389Theobroma cacaoexon
exon-auto507390auto507390Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto507391auto507391Theobroma cacaoCDS
CDS-auto507392auto507392Theobroma cacaoCDS
CDS-auto507393auto507393Theobroma cacaoCDS
CDS-auto507394auto507394Theobroma cacaoCDS
CDS-auto507395auto507395Theobroma cacaoCDS
CDS-auto507396auto507396Theobroma cacaoCDS
CDS-auto507397auto507397Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t011120.4 ID=Tc10v2_t011120.4|Name=Tc10v2_t011120.4|organism=Theobroma cacao|type=mRNA|length=1026bp
ATGGGTGCCTCAACTAATAAAGAGAACAGGTTGCCACGGGAAGCAAAGGA
TGCTCTACAATTGTTGGCTTCTGATTGGGATGATGTGGTGGACTCAAAAG
CTTTGCAGGTGATCCCTCTTAAAGGTGCAATGACCAATCAGGTCTTCCAA
ATAAAATGGCCAACTAGGACAGATGAAGTGTCACGAAAGGTTTTAGTTAG
GATTTATGGTGAGGGTGTGGAGGTGTTTTTTGACCGGGACAATGAGATCC
GTACTTTTGAGTTTATGTCGAAACATGGGCAAGGACCTCGTTTGCTTGGA
CGGTTCCCAAATGGGCGAATTGAAGAGTTCATCCGTGCACGGATACTATC
TGCATCTGATTTGCGTGATCCAAATGTATCAGCTCTAATAGCAGCTAAAT
TGAGGGAGTTCCATGAACTAGACATGCCTGGTCCAAAGAAAGTTTGGCTA
TGGGATAGATTGCAAAATTGGCTAAATGCGGCCAAGAGAGTCTGCCCTCT
GGAAGAAGCTAAAGCCCTTCGCTTGGAAGTTATTGAGGAGGAAATCTCAA
TGTTAGAAAAGAAACTCTCAGGGTGCCATCAACACATAGGTTTCTGCCAC
AATGATTTACAATATGGTAACATTATGATCGACGAAGAGACTAAATCAAT
AACCATTATTGATTACGAGTATGCAAGTTACAATCCTGTTGCCTATGATA
TTGCAAACCACTTTTGTGAGATGGCTGCTGACTATCATACAGAAATGCCC
CATATTATGGATTATAGTAAATATCCAGGTTGGGGAGAGCGCTTAAGATT
TCTGCGTATATACCTGCACTCTTCAGGTAAGGAACCCAGAGACACTGAAG
TGGACCAGCTGCTTAAAGATGTCGAGAAGTTTACTCTAGCAAGTCATCTC
ACTTGGGGCTTATGGGGAATAATATCGGAACATGTGAATGAAATTGACTT
TGACTACAAGGAGTATGCCAAGCAGAGGTTTCAGCAGTATTGGATGCAGA
GGCCTGAGCTGTTGGGCACTTCTTGA
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protein sequence of Tc10v2_p011120.4

>Tc10v2_p011120.4 ID=Tc10v2_p011120.4|Name=Tc10v2_p011120.4|organism=Theobroma cacao|type=polypeptide|length=342bp
MGASTNKENRLPREAKDALQLLASDWDDVVDSKALQVIPLKGAMTNQVFQ
IKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHGQGPRLLG
RFPNGRIEEFIRARILSASDLRDPNVSALIAAKLREFHELDMPGPKKVWL
WDRLQNWLNAAKRVCPLEEAKALRLEVIEEEISMLEKKLSGCHQHIGFCH
NDLQYGNIMIDEETKSITIIDYEYASYNPVAYDIANHFCEMAADYHTEMP
HIMDYSKYPGWGERLRFLRIYLHSSGKEPRDTEVDQLLKDVEKFTLASHL
TWGLWGIISEHVNEIDFDYKEYAKQRFQQYWMQRPELLGTS*
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