Tc10v2_t011120.3

Overview
NameTc10v2_t011120.3
Unique NameTc10v2_t011120.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1026
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productprobable choline kinase 2, transcript variant X1
NoteProbable choline kinase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587073
GenbankXM_007010731.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g011120Tc10v2_g011120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p011120.3Tc10v2_p011120.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto507364auto507364Theobroma cacaoexon
exon-auto507365auto507365Theobroma cacaoexon
exon-auto507366auto507366Theobroma cacaoexon
exon-auto507367auto507367Theobroma cacaoexon
exon-auto507368auto507368Theobroma cacaoexon
exon-auto507369auto507369Theobroma cacaoexon
exon-auto507370auto507370Theobroma cacaoexon
exon-auto507371auto507371Theobroma cacaoexon
exon-auto507372auto507372Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto507373auto507373Theobroma cacaoCDS
CDS-auto507374auto507374Theobroma cacaoCDS
CDS-auto507375auto507375Theobroma cacaoCDS
CDS-auto507376auto507376Theobroma cacaoCDS
CDS-auto507377auto507377Theobroma cacaoCDS
CDS-auto507378auto507378Theobroma cacaoCDS
CDS-auto507379auto507379Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t011120.3 ID=Tc10v2_t011120.3|Name=Tc10v2_t011120.3|organism=Theobroma cacao|type=mRNA|length=1026bp
ATGGGTGCCTCAACTAATAAAGAGAACAGGTTGCCACGGGAAGCAAAGGA
TGCTCTACAATTGTTGGCTTCTGATTGGGATGATGTGGTGGACTCAAAAG
CTTTGCAGGTGATCCCTCTTAAAGGTGCAATGACCAATCAGGTCTTCCAA
ATAAAATGGCCAACTAGGACAGATGAAGTGTCACGAAAGGTTTTAGTTAG
GATTTATGGTGAGGGTGTGGAGGTGTTTTTTGACCGGGACAATGAGATCC
GTACTTTTGAGTTTATGTCGAAACATGGGCAAGGACCTCGTTTGCTTGGA
CGGTTCCCAAATGGGCGAATTGAAGAGTTCATCCGTGCACGGATACTATC
TGCATCTGATTTGCGTGATCCAAATGTATCAGCTCTAATAGCAGCTAAAT
TGAGGGAGTTCCATGAACTAGACATGCCTGGTCCAAAGAAAGTTTGGCTA
TGGGATAGATTGCAAAATTGGCTAAATGCGGCCAAGAGAGTCTGCCCTCT
GGAAGAAGCTAAAGCCCTTCGCTTGGAAGTTATTGAGGAGGAAATCTCAA
TGTTAGAAAAGAAACTCTCAGGGTGCCATCAACACATAGGTTTCTGCCAC
AATGATTTACAATATGGTAACATTATGATCGACGAAGAGACTAAATCAAT
AACCATTATTGATTACGAGTATGCAAGTTACAATCCTGTTGCCTATGATA
TTGCAAACCACTTTTGTGAGATGGCTGCTGACTATCATACAGAAATGCCC
CATATTATGGATTATAGTAAATATCCAGGTTGGGGAGAGCGCTTAAGATT
TCTGCGTATATACCTGCACTCTTCAGGTAAGGAACCCAGAGACACTGAAG
TGGACCAGCTGCTTAAAGATGTCGAGAAGTTTACTCTAGCAAGTCATCTC
ACTTGGGGCTTATGGGGAATAATATCGGAACATGTGAATGAAATTGACTT
TGACTACAAGGAGTATGCCAAGCAGAGGTTTCAGCAGTATTGGATGCAGA
GGCCTGAGCTGTTGGGCACTTCTTGA
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protein sequence of Tc10v2_p011120.3

>Tc10v2_p011120.3 ID=Tc10v2_p011120.3|Name=Tc10v2_p011120.3|organism=Theobroma cacao|type=polypeptide|length=342bp
MGASTNKENRLPREAKDALQLLASDWDDVVDSKALQVIPLKGAMTNQVFQ
IKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHGQGPRLLG
RFPNGRIEEFIRARILSASDLRDPNVSALIAAKLREFHELDMPGPKKVWL
WDRLQNWLNAAKRVCPLEEAKALRLEVIEEEISMLEKKLSGCHQHIGFCH
NDLQYGNIMIDEETKSITIIDYEYASYNPVAYDIANHFCEMAADYHTEMP
HIMDYSKYPGWGERLRFLRIYLHSSGKEPRDTEVDQLLKDVEKFTLASHL
TWGLWGIISEHVNEIDFDYKEYAKQRFQQYWMQRPELLGTS*
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