Tc10v2_t010350.8

Overview
NameTc10v2_t010350.8
Unique NameTc10v2_t010350.8
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1824
Properties
Property NameValue
NoteRegion-like protein isoform 2
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productuncharacterized LOC18586963, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586963
GenbankXM_018129446.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010350Tc10v2_g010350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010350.8Tc10v2_p010350.8Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto506118auto506118Theobroma cacaoexon
exon-auto506119auto506119Theobroma cacaoexon
exon-auto506120auto506120Theobroma cacaoexon
exon-auto506121auto506121Theobroma cacaoexon
exon-auto506122auto506122Theobroma cacaoexon
exon-auto506123auto506123Theobroma cacaoexon
exon-auto506124auto506124Theobroma cacaoexon
exon-auto506125auto506125Theobroma cacaoexon
exon-auto506126auto506126Theobroma cacaoexon
exon-auto506127auto506127Theobroma cacaoexon
exon-auto506128auto506128Theobroma cacaoexon
exon-auto506129auto506129Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto506130auto506130Theobroma cacaoCDS
CDS-auto506131auto506131Theobroma cacaoCDS
CDS-auto506132auto506132Theobroma cacaoCDS
CDS-auto506133auto506133Theobroma cacaoCDS
CDS-auto506134auto506134Theobroma cacaoCDS
CDS-auto506135auto506135Theobroma cacaoCDS
CDS-auto506136auto506136Theobroma cacaoCDS
CDS-auto506137auto506137Theobroma cacaoCDS
CDS-auto506138auto506138Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010350.8 ID=Tc10v2_t010350.8|Name=Tc10v2_t010350.8|organism=Theobroma cacao|type=mRNA|length=1824bp
ATGACAGGAACCAAAGAAATTCTCCAATCAGGACAAGGTCTTGCTGATCA
TGATAATTACCATGAGTACTGTCGACTTCTTGGACGTTTTAGGCAGGGTT
TCCAATCAAGTTCTGCAGTGGAAAACCAATGCAACAACAACATGTTAATG
ATGCAGCCCCAAATGGCTATTTTTAATCCTCAACTGCCAATTCCATTGAG
TAATAATTCCAGTGCTATGTCATTGCTAAATAATGTTGGTTTCATGAATG
GAGCTAGCCAGCTTCTTCCCTCACAAAATAACCATCTGGGTGTTCCTCAA
TTTGGTCCCATTTTCCCAAACTTGAACAATGTTTCAATGTTCCAACAACT
TCATGGCCAATTCAATAACCCTTTGCAGAGCCCAAATCAACCCAATTGGT
TAAATTTACCTCAACAACTTAATCAAAATAATATGGGTTTGACAAATGGG
CAGCATCAGCAGCAACAACAACTTTTTTTGCAGAACCAATTGCAGAGCAT
TGGCCAACTTTTGAACCAAATCCCAAATCTCTCTCAGTTTGTTTCTGGTG
GTCAAACAATGGGATGCCTCAATCCTGCCGGTGTTCCTCCGAATCCACAG
TTTGGATTTATGCAGCAAAACCAGATACAGCAGCAAGCCAACCAGAGTCA
GCAAAATTTGGCAAATGTTAACGCATCAAAGCCATCGTCTTCCGCAGCAG
GTGCACAAGTACTAGGGGGCCCATCATTCAGAAAGCCAATGGGCAGTCCT
GGTAAAAGTGGTCAGAATTTGAATAATTTTCCAGGCAGAAATGTTGCTAG
GGATTCAAAATGGGGATTTCATAAGTCTAAGTTTCAGCAGTCTCGATTTC
ATCAAGTGGATAATGCAAAGAGAAAGTTTGCATCATCTAATGGACAAAAG
AAAAAAGGGCAGGATGATGAGAGGGCAGCTAAATTTCCTCATTCTAATTC
TACAAAACCAGACAAGGAAAAGAGAAAACGATCTCTTGCTTTGACCTACT
CGGAGCAAGAAATACGACAGTGGCGTGAAGAACGTAAGAAGCACTATCCG
ACAAAAACCAACATAAAGAAGAAACTCAGTGGGAAAGTATCAGATGCTGA
GGTTGCCAAATTGCGAAGTGAGCAACTCAAGGAAATTTTGGCAAAGCAAG
CTGAATTAGGAGTTGAAGTTGCAGAAATTCCTTCACACTATCTGTTAGGT
TCAGAGAAAAAGGTGAATGGAAGAGAAGAGAACAGTTGGCCATTAACAAA
GAGGGGGAGATTTGAAAAGAGGCATGATAAAAGAGTGAGATTTGATAAAA
GAGACCGTTTTTCCAGGAAAAGAAGATCAACTAATGAGGAATCATTTGAT
GGCACTTCTGTCAACAAAAGGAGCCCAACCCTTTTGCAGAAGCTTCTTAG
TGCTGATATAAGGAAAGATAAAAGTCATTTGTTGCAGGTTTTTAGATTCA
TGGTTATAAATTCTTTCTTCAAGGATTGGCCTGAGAAGCCCTTGAAATAT
CCTCTGGTGGTTGTTAGGGATGGTCTGAGCGAGGGTGAGATAGTTCGAGA
GAAACCCTTGGTTGTTGGGGAAGATAAACTAGAAGTCTGCGACAAGACAA
TGATCCAAAGTATTGTTAATGGTGAGAATAAAGATGGCGATGACAGTGAC
AATGATGGTGATCGTGAAAGCAAGGACGATAATGATGTTAATGGCGATGA
AGATGATGAAAATAAACATGACACTCAAGCTGACCAAGTGGCCTTGTATG
CTAGGGAGGAGAAAGCTGATAGTGGAGAAGGAATTGTGAGGAATGAGGAA
GAAGAGGGAGAAATAATTGACTAG
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protein sequence of Tc10v2_p010350.8

>Tc10v2_p010350.8 ID=Tc10v2_p010350.8|Name=Tc10v2_p010350.8|organism=Theobroma cacao|type=polypeptide|length=608bp
MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQCNNNMLM
MQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQ
FGPIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNG
QHQQQQQLFLQNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQ
FGFMQQNQIQQQANQSQQNLANVNASKPSSSAAGAQVLGGPSFRKPMGSP
GKSGQNLNNFPGRNVARDSKWGFHKSKFQQSRFHQVDNAKRKFASSNGQK
KKGQDDERAAKFPHSNSTKPDKEKRKRSLALTYSEQEIRQWREERKKHYP
TKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAEIPSHYLLG
SEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFD
GTSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKY
PLVVVRDGLSEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSD
NDGDRESKDDNDVNGDEDDENKHDTQADQVALYAREEKADSGEGIVRNEE
EEGEIID*
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