Tc10v2_t010350.1

Overview
NameTc10v2_t010350.1
Unique NameTc10v2_t010350.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1821
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productuncharacterized LOC18586963, transcript variant X9
NoteRegion-like protein isoform 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586963
GenbankXM_018129451.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010350Tc10v2_g010350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010350.1Tc10v2_p010350.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505962auto505962Theobroma cacaoexon
exon-auto505963auto505963Theobroma cacaoexon
exon-auto505964auto505964Theobroma cacaoexon
exon-auto505965auto505965Theobroma cacaoexon
exon-auto505966auto505966Theobroma cacaoexon
exon-auto505967auto505967Theobroma cacaoexon
exon-auto505968auto505968Theobroma cacaoexon
exon-auto505969auto505969Theobroma cacaoexon
exon-auto505970auto505970Theobroma cacaoexon
exon-auto505971auto505971Theobroma cacaoexon
exon-auto505972auto505972Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505973auto505973Theobroma cacaoCDS
CDS-auto505974auto505974Theobroma cacaoCDS
CDS-auto505975auto505975Theobroma cacaoCDS
CDS-auto505976auto505976Theobroma cacaoCDS
CDS-auto505977auto505977Theobroma cacaoCDS
CDS-auto505978auto505978Theobroma cacaoCDS
CDS-auto505979auto505979Theobroma cacaoCDS
CDS-auto505980auto505980Theobroma cacaoCDS
CDS-auto505981auto505981Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010350.1 ID=Tc10v2_t010350.1|Name=Tc10v2_t010350.1|organism=Theobroma cacao|type=mRNA|length=1821bp
ATGACAGGAACCAAAGAAATTCTCCAATCAGGACAAGGTCTTGCTGATCA
TGATAATTACCATGAGTACTGTCGACTTCTTGGACGTTTTAGGCAGGGTT
TCCAATCAAGTTCTGCAGTGGAAAACCAATGCAACAACAACATGTTAATG
ATGCAGCCCCAAATGGCTATTTTTAATCCTCAACTGCCAATTCCATTGAG
TAATAATTCCAGTGCTATGTCATTGCTAAATAATGTTGGTTTCATGAATG
GAGCTAGCCAGCTTCTTCCCTCACAAAATAACCATCTGGGTGTTCCTCAA
TTTGGTCCCATTTTCCCAAACTTGAACAATGTTTCAATGTTCCAACAACT
TCATGGCCAATTCAATAACCCTTTGCAGAGCCCAAATCAACCCAATTGGT
TAAATTTACCTCAACAACTTAATCAAAATAATATGGGTTTGACAAATGGG
CAGCATCAGCAGCAACAACAACTTTTTTTGCAGAACCAATTGCAGAGCAT
TGGCCAACTTTTGAACCAAATCCCAAATCTCTCTCAGTTTGTTTCTGGTG
GTCAAACAATGGGATGCCTCAATCCTGCCGGTGTTCCTCCGAATCCACAG
TTTGGATTTATGCAGCAAAACCAGATACAGCAGCAAGCCAACCAGAGTCA
GCAAAATTTGGCAAATGTTAACGCATCAAAGCCATCGTCTTCCGCAGCAG
GTGCACAAGTACTAGGGGGCCCATCATTCAGAAAGCCAATGGGCAGTCCT
GGTAAAAGTGGTCAGAATTTGAATAATTTTCCAGGCAGAAATGTTGCTAG
GGATTCAAAATGGGGATTTCATAAGTCTAAGTTTCAGCAGTCTCGATTTC
ATCAAGTGGATAATGCAAAGAGAAAGTTTGCATCATCTAATGGACAAAAG
AAAAAAGGGCAGGATGATGAGAGGGCAGCTAAATTTCCTCATTCTAATTC
TACAAAACCAGACAAGGAAAAGAGAAAATCTCTTGCTTTGACCTACTCGG
AGCAAGAAATACGACAGTGGCGTGAAGAACGTAAGAAGCACTATCCGACA
AAAACCAACATAAAGAAGAAACTCAGTGGGAAAGTATCAGATGCTGAGGT
TGCCAAATTGCGAAGTGAGCAACTCAAGGAAATTTTGGCAAAGCAAGCTG
AATTAGGAGTTGAAGTTGCAGAAATTCCTTCACACTATCTGTTAGGTTCA
GAGAAAAAGGTGAATGGAAGAGAAGAGAACAGTTGGCCATTAACAAAGAG
GGGGAGATTTGAAAAGAGGCATGATAAAAGAGTGAGATTTGATAAAAGAG
ACCGTTTTTCCAGGAAAAGAAGATCAACTAATGAGGAATCATTTGATGGC
ACTTCTGTCAACAAAAGGAGCCCAACCCTTTTGCAGAAGCTTCTTAGTGC
TGATATAAGGAAAGATAAAAGTCATTTGTTGCAGGTTTTTAGATTCATGG
TTATAAATTCTTTCTTCAAGGATTGGCCTGAGAAGCCCTTGAAATATCCT
CTGGTGGTTGTTAGGGATGGTCTGAGCGAGGGTGAGATAGTTCGAGAGAA
ACCCTTGGTTGTTGGGGAAGATAAACTAGAAGTCTGCGACAAGACAATGA
TCCAAAGTATTGTTAATGGTGAGAATAAAGATGGCGATGACAGTGACAAT
GATGGTGATCGTGAAAGCAAGGACGATAATGATGTTAATGGCGATGAAGA
TGATGAAAATAAACATGACACTCAAGCTGACCAAGTGGCCTTGTATGCTA
GGGAGGAGAAAGCTGATAGTGGAGAAGGAATTGTGAGGAATGAGGAAGAA
GAGGGAGAAATAATTGACTAG
back to top

protein sequence of Tc10v2_p010350.1

>Tc10v2_p010350.1 ID=Tc10v2_p010350.1|Name=Tc10v2_p010350.1|organism=Theobroma cacao|type=polypeptide|length=607bp
MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQCNNNMLM
MQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQ
FGPIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNG
QHQQQQQLFLQNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQ
FGFMQQNQIQQQANQSQQNLANVNASKPSSSAAGAQVLGGPSFRKPMGSP
GKSGQNLNNFPGRNVARDSKWGFHKSKFQQSRFHQVDNAKRKFASSNGQK
KKGQDDERAAKFPHSNSTKPDKEKRKSLALTYSEQEIRQWREERKKHYPT
KTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAEIPSHYLLGS
EKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFDG
TSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYP
LVVVRDGLSEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDN
DGDRESKDDNDVNGDEDDENKHDTQADQVALYAREEKADSGEGIVRNEEE
EGEIID*
back to top