Tc10v2_t010210.5

Overview
NameTc10v2_t010210.5
Unique NameTc10v2_t010210.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1929
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Productcleavage stimulation factor subunit 77, transcript variant X7
NoteCleavage stimulation factor subunit 77
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586939
GenbankXM_018129332.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010210Tc10v2_g010210Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010210.5Tc10v2_p010210.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505574auto505574Theobroma cacaoexon
exon-auto505575auto505575Theobroma cacaoexon
exon-auto505576auto505576Theobroma cacaoexon
exon-auto505577auto505577Theobroma cacaoexon
exon-auto505578auto505578Theobroma cacaoexon
exon-auto505579auto505579Theobroma cacaoexon
exon-auto505580auto505580Theobroma cacaoexon
exon-auto505581auto505581Theobroma cacaoexon
exon-auto505582auto505582Theobroma cacaoexon
exon-auto505583auto505583Theobroma cacaoexon
exon-auto505584auto505584Theobroma cacaoexon
exon-auto505585auto505585Theobroma cacaoexon
exon-auto505586auto505586Theobroma cacaoexon
exon-auto505587auto505587Theobroma cacaoexon
exon-auto505588auto505588Theobroma cacaoexon
exon-auto505589auto505589Theobroma cacaoexon
exon-auto505590auto505590Theobroma cacaoexon
exon-auto505591auto505591Theobroma cacaoexon
exon-auto505592auto505592Theobroma cacaoexon
exon-auto505593auto505593Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505594auto505594Theobroma cacaoCDS
CDS-auto505595auto505595Theobroma cacaoCDS
CDS-auto505596auto505596Theobroma cacaoCDS
CDS-auto505597auto505597Theobroma cacaoCDS
CDS-auto505598auto505598Theobroma cacaoCDS
CDS-auto505599auto505599Theobroma cacaoCDS
CDS-auto505600auto505600Theobroma cacaoCDS
CDS-auto505601auto505601Theobroma cacaoCDS
CDS-auto505602auto505602Theobroma cacaoCDS
CDS-auto505603auto505603Theobroma cacaoCDS
CDS-auto505604auto505604Theobroma cacaoCDS
CDS-auto505605auto505605Theobroma cacaoCDS
CDS-auto505606auto505606Theobroma cacaoCDS
CDS-auto505607auto505607Theobroma cacaoCDS
CDS-auto505608auto505608Theobroma cacaoCDS
CDS-auto505609auto505609Theobroma cacaoCDS
CDS-auto505610auto505610Theobroma cacaoCDS
CDS-auto505611auto505611Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010210.5 ID=Tc10v2_t010210.5|Name=Tc10v2_t010210.5|organism=Theobroma cacao|type=mRNA|length=1929bp
ATGGAGTACATTGCATTTTTGAAATCACTGCCGGCTGCAAACACTCAGGA
AGAGTCACAACGGATGACTGCAGTGCGGAAAGCTTACCAGAAAGCTATTG
TTACTCCAACTCATCACGTTGAACAGCTATGGAAGGATTATGAAAATTTT
GAAAATTCTGTCAGCCGCCAACTGGCTAAAGGACTTCTCTCTGAATATCA
ACCAAAATATAACAGTGCAAGGGCTGTGTATAGGGAACGGAAGAAATATG
TGGATGAAATTGATTGGAATATGCTTGCTGTACCACCAACCGACTCTTGC
AAGGAAGAAATGCAATGGATGACATGGAAGAGGCTTTTAGCCTTTGAGAA
AGGAAATCCTCAAAGGATAGATAGTGCCTCCTCCAACAAGCGAATTATAT
TCACTTATGAACAGTGTCTAATGTATTTATACCATTATCCTGATATATGG
TATGATTATGCTACATGGCACGCAAAAAGTGGCTCCATGGATGCTGCGAC
CAAGGTGTTTCAGCGAGCCTTGAAGGCTCTTCCTGATTCAGAAATGCTAA
ATTATGCATATGCAGAGCTAGAGGAATCCCGTGGAGCAATCCAATCTGCA
AAGAAATTATATGAAAGCCTTTTGGGGAATGGTGCTGACACTACAGCACT
AGCACATATACAATTTATCCGCTTTATAAGAAGGACTGAAGGTGTTGAAG
CAGCTCGCAAGTATTTCTTAGATGCTCGTAAAACCCCTACTTGCACGTAT
CATGTTTATGTTGCTTATGCTTTGATGGCTTTTTGTCTTGACAAGGACCC
AAAGGTTGCTCACAATGTTTTTGAAGCAGGATTGAAACATTTTATGCATG
AGCCTGCATACATCCTAGAATATGCAGATTTTTTGTCTTGTTTGAATGAT
GACAGAAACATCCGGGCATTATTTGAGCGAGCATTAAGCTCACTACCACA
AGAAGAATCTATTGAGGTCTGGAAACAATTCACCCAGTTTGAGCAAACTT
ATGGTGATCTAGCTAGCATGTTGAAGGTTGAGCAAAGACGGAAGGAAGCT
CTTTCTGGCAAAAGTGAAGAGGCTGCTTCTGTGTTGGAGAGTTCTCTACA
AGATGTTGTAGCACGCTACAGTTTCAAGGATCTCTGGCCCTGTACTTCCA
AGGATCTTGACCATTTGTCCCGACAAGAGTGGCTCGCTAAAAACATTGGT
AAGAAAGTGGAAAAGTCAGCTTTCTCTAATGGATCTGCGACAATAGATAA
GAATCCATCCGCACCAACAAGCAATTCAACTGCTTCTGTTAAAGTCCTTT
ATCCAGATATATCTCAGATGGTGGTTTATGATCCAAGGCAACATTCTGGA
ACTGCAGCTCCTCCAAACACAACAGCTCCTGCAATTCTTGCTGCTTCCAA
CCCCTTGTCAAATCCCACAATTTCTGCAGTAGACAGTGGATCTGCCAATG
CATTTGATGAAGTACTGAAAGCAACACCACCTGCTTTGGTGGCATTTCTG
ACAAACTTGCCTGCTCTTGAAGGTCCGATACCAAATGTAGACATTGTATT
GTCCATATGTTTGCAGAGTAACTTACCAACTGGTCAAACTAAGAAGTTAA
CTGCCCTCCCATCTCAAAGGACTACAGGTCCTGCTCCTAGCACAAGTGAT
CTTTCTGGTTCAAGCAAGTCCCATCCCATCCCTAGTAGCTCATCTTTCAG
ACCAAGGGACAGGCATCTTGGAAAAAGAAAGGATCTAGACAGTAAGTTTC
CTGCCGTATTCATGGGGCAAGAGGAGGATGAAACTACAACAGTTCAAAGC
CAACCACTGCCAAGAGACGTTTTCAGGATACGGCAAATTCAGAAGGCTCG
AGGAGGTTCTGCTTCACAGACTGGATCAGTATCTTATGGAAGTGCTCTTT
CTGGGGATCTCTCCGGCAGTACTTACTAA
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protein sequence of Tc10v2_p010210.5

>Tc10v2_p010210.5 ID=Tc10v2_p010210.5|Name=Tc10v2_p010210.5|organism=Theobroma cacao|type=polypeptide|length=643bp
MEYIAFLKSLPAANTQEESQRMTAVRKAYQKAIVTPTHHVEQLWKDYENF
ENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPTDSC
KEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDIW
YDYATWHAKSGSMDAATKVFQRALKALPDSEMLNYAYAELEESRGAIQSA
KKLYESLLGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTY
HVYVAYALMAFCLDKDPKVAHNVFEAGLKHFMHEPAYILEYADFLSCLND
DRNIRALFERALSSLPQEESIEVWKQFTQFEQTYGDLASMLKVEQRRKEA
LSGKSEEAASVLESSLQDVVARYSFKDLWPCTSKDLDHLSRQEWLAKNIG
KKVEKSAFSNGSATIDKNPSAPTSNSTASVKVLYPDISQMVVYDPRQHSG
TAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKATPPALVAFL
TNLPALEGPIPNVDIVLSICLQSNLPTGQTKKLTALPSQRTTGPAPSTSD
LSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFPAVFMGQEEDETTTVQS
QPLPRDVFRIRQIQKARGGSASQTGSVSYGSALSGDLSGSTY*
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