Tc10v2_t010210.4

Overview
NameTc10v2_t010210.4
Unique NameTc10v2_t010210.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2310
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productcleavage stimulation factor subunit 77, transcript variant X1
NoteCleavage stimulation factor subunit 77
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586939
GenbankXM_018129328.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010210Tc10v2_g010210Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010210.4Tc10v2_p010210.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505527auto505527Theobroma cacaoexon
exon-auto505528auto505528Theobroma cacaoexon
exon-auto505529auto505529Theobroma cacaoexon
exon-auto505530auto505530Theobroma cacaoexon
exon-auto505531auto505531Theobroma cacaoexon
exon-auto505532auto505532Theobroma cacaoexon
exon-auto505533auto505533Theobroma cacaoexon
exon-auto505534auto505534Theobroma cacaoexon
exon-auto505535auto505535Theobroma cacaoexon
exon-auto505536auto505536Theobroma cacaoexon
exon-auto505537auto505537Theobroma cacaoexon
exon-auto505538auto505538Theobroma cacaoexon
exon-auto505539auto505539Theobroma cacaoexon
exon-auto505540auto505540Theobroma cacaoexon
exon-auto505541auto505541Theobroma cacaoexon
exon-auto505542auto505542Theobroma cacaoexon
exon-auto505543auto505543Theobroma cacaoexon
exon-auto505544auto505544Theobroma cacaoexon
exon-auto505545auto505545Theobroma cacaoexon
exon-auto505546auto505546Theobroma cacaoexon
exon-auto505547auto505547Theobroma cacaoexon
exon-auto505548auto505548Theobroma cacaoexon
exon-auto505549auto505549Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505550auto505550Theobroma cacaoCDS
CDS-auto505551auto505551Theobroma cacaoCDS
CDS-auto505552auto505552Theobroma cacaoCDS
CDS-auto505553auto505553Theobroma cacaoCDS
CDS-auto505554auto505554Theobroma cacaoCDS
CDS-auto505555auto505555Theobroma cacaoCDS
CDS-auto505556auto505556Theobroma cacaoCDS
CDS-auto505557auto505557Theobroma cacaoCDS
CDS-auto505558auto505558Theobroma cacaoCDS
CDS-auto505559auto505559Theobroma cacaoCDS
CDS-auto505560auto505560Theobroma cacaoCDS
CDS-auto505561auto505561Theobroma cacaoCDS
CDS-auto505562auto505562Theobroma cacaoCDS
CDS-auto505563auto505563Theobroma cacaoCDS
CDS-auto505564auto505564Theobroma cacaoCDS
CDS-auto505565auto505565Theobroma cacaoCDS
CDS-auto505566auto505566Theobroma cacaoCDS
CDS-auto505567auto505567Theobroma cacaoCDS
CDS-auto505568auto505568Theobroma cacaoCDS
CDS-auto505569auto505569Theobroma cacaoCDS
CDS-auto505570auto505570Theobroma cacaoCDS
CDS-auto505571auto505571Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010210.4 ID=Tc10v2_t010210.4|Name=Tc10v2_t010210.4|organism=Theobroma cacao|type=mRNA|length=2310bp
ATGGCGGCCGTTGACAAATACAACGTCGAGTCGGCTGAAATTCTCGCCAA
CAGTGCCTTGCATTTGCCAATTACACAGGCTGCCCCAATTTATGAGCAAC
TCTTGTCAATTTTTCCCACCGCTGCAAAATATTGGAGGCAATATGTGGAG
GCTCAGATGGCGGTGAGCAACGATGATGCTACCAAACAAATATTTAGTCG
CTGTTTATTGAATTGTCTTCAAATTCCTCTTTGGCGCTGTTATATTCGAT
TCATCCGGAAGGTCAACGACAAGAAAGGTGTAGAGGGTCAGGAAGAGACT
AGAAAGGCATTTGATTTTATGCTTGGCTATGTTGGTGCTGACATAGGATC
TGGACCTGTGTGGATGGAGTACATTGCATTTTTGAAATCACTGCCGCACA
AGATGGTTTTGCAGGCTGCAAACACTCAGGAAGAGTCACAACGGATGACT
GCAGTGCGGAAAGCTTACCAGAAAGCTATTGTTACTCCAACTCATCACGT
TGAACAGCTATGGAAGGATTATGAAAATTTTGAAAATTCTGTCAGCCGCC
AACTGGCTAAAGGACTTCTCTCTGAATATCAACCAAAATATAACAGTGCA
AGGGCTGTGTATAGGGAACGGAAGAAATATGTGGATGAAATTGATTGGAA
TATGCTTGCTGTACCACCAACCGACTCTTGCAAGGAAGAAATGCAATGGA
TGACATGGAAGAGGCTTTTAGCCTTTGAGAAAGGAAATCCTCAAAGGATA
GATAGTGCCTCCTCCAACAAGCGAATTATATTCACTTATGAACAGTGTCT
AATGTATTTATACCATTATCCTGATATATGGTATGATTATGCTACATGGC
ACGCAAAAAGTGGCTCCATGGATGCTGCGACCAAGGTGTTTCAGCGAGCC
TTGAAGGCTCTTCCTGATTCAGAAATGCTAAATTATGCATATGCAGAGCT
AGAGGAATCCCGTGGAGCAATCCAATCTGCAAAGAAATTATATGAAAGCC
TTTTGGGGAATGGTGCTGACACTACAGCACTAGCACATATACAATTTATC
CGCTTTATAAGAAGGACTGAAGGTGTTGAAGCAGCTCGCAAGTATTTCTT
AGATGCTCGTAAAACCCCTACTTGCACGTATCATGTTTATGTTGCTTATG
CTTTGATGGCTTTTTGTCTTGACAAGGACCCAAAGGTTGCTCACAATGTT
TTTGAAGCAGGATTGAAACATTTTATGCATGAGCCTGCATACATCCTAGA
ATATGCAGATTTTTTGTCTTGTTTGAATGATGACAGAAACATCCGGGCAT
TATTTGAGCGAGCATTAAGCTCACTACCACAAGAAGAATCTATTGAGGTC
TGGAAACAATTCACCCAGTTTGAGCAAACTTATGGTGATCTAGCTAGCAT
GTTGAAGGTTGAGCAAAGACGGAAGGAAGCTCTTTCTGGCAAAAGTGAAG
AGGCTGCTTCTGTGTTGGAGAGTTCTCTACAAGATGTTGTAGCACGCTAC
AGTTTCAAGGATCTCTGGCCCTGTACTTCCAAGGATCTTGACCATTTGTC
CCGACAAGAGTGGCTCGCTAAAAACATTGGTAAGAAAGTGGAAAAGTCAG
CTTTCTCTAATGGATCTGCGACAATAGATAAGAATCCATCCGCACCAACA
AGCAATTCAACTGCTTCTGTTAAAGTCCTTTATCCAGATATATCTCAGAT
GGTGGTTTATGATCCAAGGCAACATTCTGGAACTGCAGCTCCTCCAAACA
CAACAGCTCCTGCAATTCTTGCTGCTTCCAACCCCTTGTCAAATCCCACA
ATTTCTGCAGTAGACAGTGGATCTGCCAATGCATTTGATGAAGTACTGAA
AGCAACACCACCTGCTTTGGTGGCATTTCTGACAAACTTGCCTGCTCTTG
AAGGTCCGATACCAAATGTAGACATTGTATTGTCCATATGTTTGCAGAGT
AACTTACCAACTGGTCAAACTAAGAAGTTAACTGCCCTCCCATCTCAAAG
GACTACAGGTCCTGCTCCTAGCACAAGTGATCTTTCTGGTTCAAGCAAGT
CCCATCCCATCCCTAGTAGCTCATCTTTCAGACCAAGGGACAGGCATCTT
GGAAAAAGAAAGGATCTAGACAGTAAGTTTCCTGCCGTATTCATGGGGCA
AGAGGAGGATGAAACTACAACAGTTCAAAGCCAACCACTGCCAAGAGACG
TTTTCAGGATACGGCAAATTCAGAAGGCTCGAGGAGGTTCTGCTTCACAG
ACTGGATCAGTATCTTATGGAAGTGCTCTTTCTGGGGATCTCTCCGGCAG
TACTTACTAA
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protein sequence of Tc10v2_p010210.4

>Tc10v2_p010210.4 ID=Tc10v2_p010210.4|Name=Tc10v2_p010210.4|organism=Theobroma cacao|type=polypeptide|length=770bp
MAAVDKYNVESAEILANSALHLPITQAAPIYEQLLSIFPTAAKYWRQYVE
AQMAVSNDDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEGQEET
RKAFDFMLGYVGADIGSGPVWMEYIAFLKSLPHKMVLQAANTQEESQRMT
AVRKAYQKAIVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSA
RAVYRERKKYVDEIDWNMLAVPPTDSCKEEMQWMTWKRLLAFEKGNPQRI
DSASSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKSGSMDAATKVFQRA
LKALPDSEMLNYAYAELEESRGAIQSAKKLYESLLGNGADTTALAHIQFI
RFIRRTEGVEAARKYFLDARKTPTCTYHVYVAYALMAFCLDKDPKVAHNV
FEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSSLPQEESIEV
WKQFTQFEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVARY
SFKDLWPCTSKDLDHLSRQEWLAKNIGKKVEKSAFSNGSATIDKNPSAPT
SNSTASVKVLYPDISQMVVYDPRQHSGTAAPPNTTAPAILAASNPLSNPT
ISAVDSGSANAFDEVLKATPPALVAFLTNLPALEGPIPNVDIVLSICLQS
NLPTGQTKKLTALPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHL
GKRKDLDSKFPAVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ
TGSVSYGSALSGDLSGSTY*
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