Tc10v2_t010100.3

Overview
NameTc10v2_t010100.3
Unique NameTc10v2_t010100.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length663
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productglutathione S-transferase zeta class, transcript variant X2
NoteGlutathione S-transferase zeta class
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586923
GenbankXM_007010516.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010100Tc10v2_g010100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010100.3Tc10v2_p010100.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505098auto505098Theobroma cacaoexon
exon-auto505099auto505099Theobroma cacaoexon
exon-auto505100auto505100Theobroma cacaoexon
exon-auto505101auto505101Theobroma cacaoexon
exon-auto505102auto505102Theobroma cacaoexon
exon-auto505103auto505103Theobroma cacaoexon
exon-auto505104auto505104Theobroma cacaoexon
exon-auto505105auto505105Theobroma cacaoexon
exon-auto505106auto505106Theobroma cacaoexon
exon-auto505107auto505107Theobroma cacaoexon
exon-auto505108auto505108Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505109auto505109Theobroma cacaoCDS
CDS-auto505110auto505110Theobroma cacaoCDS
CDS-auto505111auto505111Theobroma cacaoCDS
CDS-auto505112auto505112Theobroma cacaoCDS
CDS-auto505113auto505113Theobroma cacaoCDS
CDS-auto505114auto505114Theobroma cacaoCDS
CDS-auto505115auto505115Theobroma cacaoCDS
CDS-auto505116auto505116Theobroma cacaoCDS
CDS-auto505117auto505117Theobroma cacaoCDS
CDS-auto505118auto505118Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010100.3 ID=Tc10v2_t010100.3|Name=Tc10v2_t010100.3|organism=Theobroma cacao|type=mRNA|length=663bp
ATGGCACATGAGGAGAAGAAACTGAAGCTCTATTCTTACTGGAGGAGCTC
CTGCTCCTGCCGAATCCGGATTGCCCTCAACCTCAAAGGTCTGGAGTACC
AGTACATACCCGTTAACTTGCTCAAGGGGGAGCAATTCAGTCCTGAATTT
CAAAAGCTGAATCCCATTGGGTATGTGCCGGTGCTGGTGGATGGTGACAT
TGTCATTTCAGACTCTTTTGCCATTTTCATGTATCTGGAGGAGAAATACC
CTCAACATCCGCTGTTGCCATCTGATCTTCAAAAAAAGGCACTCAATTTC
CAGGCTGCAAATATTGTTTGCTCAAGCATACAGCCTCTTCAGAATCTAGC
TAAATACATTGAGGAAAAAGCAAGTCCAGATGAGAAAATTCCTTGGGCAA
AACGTCATATTGAGAAGGGCTTTGAAGCACTTGAGAAGTTGTTAAAGGAC
CATGCTGGAATATATGCAACTGGAGATGAAGTTTTCATGGCTGATCTGTT
TCTAGCACCACAGGTTCATGCTGGGATTAAAAGATTCAATGTTGACATGG
CTAAATTCCCGCTTTTATCTAGGTTGAATGAGGCATATAGTGAGCTACCA
CATTTCCAAAATGCTATGCCAGAGAATCAACCAGATAGTCCTTCAGCATG
GGGCACTTGTTAA
back to top

protein sequence of Tc10v2_p010100.3

>Tc10v2_p010100.3 ID=Tc10v2_p010100.3|Name=Tc10v2_p010100.3|organism=Theobroma cacao|type=polypeptide|length=221bp
MAHEEKKLKLYSYWRSSCSCRIRIALNLKGLEYQYIPVNLLKGEQFSPEF
QKLNPIGYVPVLVDGDIVISDSFAIFMYLEEKYPQHPLLPSDLQKKALNF
QAANIVCSSIQPLQNLAKYIEEKASPDEKIPWAKRHIEKGFEALEKLLKD
HAGIYATGDEVFMADLFLAPQVHAGIKRFNVDMAKFPLLSRLNEAYSELP
HFQNAMPENQPDSPSAWGTC*
back to top