Tc10v2_t007980.1

Overview
NameTc10v2_t007980.1
Unique NameTc10v2_t007980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length465
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Productuncharacterized LOC18586628, transcript variant X2
NoteDNA/RNA polymerases superfamily protein isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586628
GenbankXM_018128588.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g007980Tc10v2_g007980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p007980.1Tc10v2_p007980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto501735auto501735Theobroma cacaoexon
exon-auto501736auto501736Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto501737auto501737Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t007980.1 ID=Tc10v2_t007980.1|Name=Tc10v2_t007980.1|organism=Theobroma cacao|type=mRNA|length=465bp
ATGGTTGGTCGAGGCAGAGGTCGAGGTAGAGGCAATCAGCCCCAACAAGC
TGAGTTGGTAAAGATGCGGAGAATGATTGATGACTTGACCTGGGCTATGC
AAGCCTTGCAGCTTCAGGAACTAGTGGAAGCCCGAATGGAGAATCCGAAA
GGTGACCATAACCCTTTTGAGATTCACAATCTCGAGGATGATGATGAATT
TGAGAACGAGAACCCCTTTCATGAAGATGTACCCGTAAATCAAGCGGCAA
GAGTTGGATTGAAGGGTCGATTATTATATGCTCTTGATTTAAACGGTGGA
GGAATCAGGATCGAAGTAATTGATTTTCATGAGAAATTTCATGCGGAGGA
ATATTTGGATTGGGAAGCTAGTTTGAAAAATTACTTTGAATGGAAACCTA
TGGCAGAAAATCGAAAAGTATTATTTGTGAAGTTGAAATTGAAGGGTACT
GCACTTCAATGGTGA
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protein sequence of Tc10v2_p007980.1

>Tc10v2_p007980.1 ID=Tc10v2_p007980.1|Name=Tc10v2_p007980.1|organism=Theobroma cacao|type=polypeptide|length=155bp
MVGRGRGRGRGNQPQQAELVKMRRMIDDLTWAMQALQLQELVEARMENPK
GDHNPFEIHNLEDDDEFENENPFHEDVPVNQAARVGLKGRLLYALDLNGG
GIRIEVIDFHEKFHAEEYLDWEASLKNYFEWKPMAENRKVLFVKLKLKGT
ALQW*
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