Tc10v2_t007140.1

Overview
NameTc10v2_t007140.1
Unique NameTc10v2_t007140.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1482
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 135 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productprobable pectate lyase 13, transcript variant X2
NoteProbable pectate lyase 13
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586518
GenbankXM_018129168.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g007140Tc10v2_g007140Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p007140.1Tc10v2_p007140.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto499702auto499702Theobroma cacaoexon
exon-auto499703auto499703Theobroma cacaoexon
exon-auto499704auto499704Theobroma cacaoexon
exon-auto499705auto499705Theobroma cacaoexon
exon-auto499706auto499706Theobroma cacaoexon
exon-auto499707auto499707Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto499708auto499708Theobroma cacaoCDS
CDS-auto499709auto499709Theobroma cacaoCDS
CDS-auto499710auto499710Theobroma cacaoCDS
CDS-auto499711auto499711Theobroma cacaoCDS
CDS-auto499712auto499712Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t007140.1 ID=Tc10v2_t007140.1|Name=Tc10v2_t007140.1|organism=Theobroma cacao|type=mRNA|length=1482bp
ATGCTTCCTTTAACCTGCATTCTCTTAATATGCACACTGGGTTCTGTCTC
TTCCATTGCCAGAGCTGCCTTCAATCTTAGCCTCCCTCACCAGCACCCTG
ACCCTGAATCCGTTGTTCAAGATGTTCAAAGGAGGTTAAACGTGTCCTTG
TCAAGAAGACAAGCCCTGTCTGTAACCCAAAAAGACCAATGTCGCACTGG
AAACCCCATCGACGACTGCTGGCGGTGCGACCCAAACTGGTACAACAACC
GCCAACACTTAGCCGACTGCTCCATAGGCTTTGCACAAGGCACTCTAGGT
GGAAAAGGTGGCCGGATCTACACCGTCACAGATTCCTCCGACAGCAACCC
TGCTAACCCCAAGCCGGGCACTCTCCGTCACGCTGTCATCCAAAACGAAC
CCCTATGGATCATCTTCTCAACCAACATGGTCATCAAGCTCAAACATGAG
CTGATTTTCAACTCATACAAAACCGTCGATGGCCGGGGAGCCAACGTTCA
TATCACCGGAAATGGGTGTATAACTTTGCAGTATGTGTCTCATGTCATCA
TCCATAACATCCATGTACACCATTGTAAGCCTTCGGGGAACACTGACATT
GCTTCATCTCCAACTCACGTTGGATGGAGAGGGCGGTCGGACGGTGATGG
GATTTCCATATTTAGTTCTCAGAAGCTCTGGATTGATCATTGCTCCCTTA
GTTACTGCACTGATGGCCTGATCGATGCTATCATGGGGTCCACCGGGATT
ACCATTAGTAATAACTACTTTTCTCACCATGATGAAGTTATGCTTCTGGG
CCATGATGACAGGTATTTGCCTGATTCCGGAATGCAGGTGACCATAGCTT
TTAATCACTTCGGACAAGGGTTGGTGCAAAGAATGCCAAGGTGCCGGCGG
GGGTATATACACGTGGTGAACAATGATTTTACTGCATGGGAAATGTATGC
TATCGGTGGTAGTGCAAACCCTACCATCAATAGTCAGGGGAATCGATATA
CTGCACCAGGGGACCCCAATGCTAAAGAGGTGACGAAGCGAGTGGACACA
GACGAGAAAGACTGGACAGGCTGGAACTGGAGGACAGAGGGGGACTTAAT
GGTAAATGGAGCATACTTTGTGCCCTCTGGAGCTGGCTTAAGCGCTCAGT
ATGCAAAAGCTTCCAGTGTGGAGCCCAAGTCTGCTGCTCTCATTGAACAG
CTCACTTTCAACGCTGGCGTTTTCGGTGAGGCTAGGGAAGAGACAGGGAG
CTTTTCTTATCCAGGATACAGCAGCGGTGGGTCCAGCAGCACCAGCACCG
GTAGTGCACGGTCCGGCGATGATGGCGACTACTTTGGAATGATATTCGGG
AGCGGCTCACCACTGCCCCCAGCATCCACATCCATAGCCTCAATCTTTTT
GTCTCTTCTAATTATTTTGGTTTTGTATTCTATCACCAACCAAGGTGCTC
TACCATCATTATTATCATTATTATTGTTATAG
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protein sequence of Tc10v2_p007140.1

>Tc10v2_p007140.1 ID=Tc10v2_p007140.1|Name=Tc10v2_p007140.1|organism=Theobroma cacao|type=polypeptide|length=494bp
MLPLTCILLICTLGSVSSIARAAFNLSLPHQHPDPESVVQDVQRRLNVSL
SRRQALSVTQKDQCRTGNPIDDCWRCDPNWYNNRQHLADCSIGFAQGTLG
GKGGRIYTVTDSSDSNPANPKPGTLRHAVIQNEPLWIIFSTNMVIKLKHE
LIFNSYKTVDGRGANVHITGNGCITLQYVSHVIIHNIHVHHCKPSGNTDI
ASSPTHVGWRGRSDGDGISIFSSQKLWIDHCSLSYCTDGLIDAIMGSTGI
TISNNYFSHHDEVMLLGHDDRYLPDSGMQVTIAFNHFGQGLVQRMPRCRR
GYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPGDPNAKEVTKRVDT
DEKDWTGWNWRTEGDLMVNGAYFVPSGAGLSAQYAKASSVEPKSAALIEQ
LTFNAGVFGEAREETGSFSYPGYSSGGSSSTSTGSARSGDDGDYFGMIFG
SGSPLPPASTSIASIFLSLLIILVLYSITNQGALPSLLSLLLL*
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