Tc10v2_t006980.1

Overview
NameTc10v2_t006980.1
Unique NameTc10v2_t006980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length690
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productvacuolar protein sorting-associated protein 24 homolog 1
NoteVacuolar protein sorting-associated protein 24 homolog 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586505
GenbankXM_007009946.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g006980Tc10v2_g006980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p006980.1Tc10v2_p006980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto499415auto499415Theobroma cacaoexon
exon-auto499416auto499416Theobroma cacaoexon
exon-auto499417auto499417Theobroma cacaoexon
exon-auto499418auto499418Theobroma cacaoexon
exon-auto499419auto499419Theobroma cacaoexon
exon-auto499420auto499420Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto499421auto499421Theobroma cacaoCDS
CDS-auto499422auto499422Theobroma cacaoCDS
CDS-auto499423auto499423Theobroma cacaoCDS
CDS-auto499424auto499424Theobroma cacaoCDS
CDS-auto499425auto499425Theobroma cacaoCDS
CDS-auto499426auto499426Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t006980.1 ID=Tc10v2_t006980.1|Name=Tc10v2_t006980.1|organism=Theobroma cacao|type=mRNA|length=690bp
ATGGATAAATTTAAGAGTATGTTGAAACCCAAGACAAACCCACAACAATT
ATTAAGAGATTGGCAAAGAAAGCTTCGTCAAGAGTGCCGTAACATTGAAC
GCCAAATCAGAGATGTTCAGAGAGAGGAGAAAAGTGTACAGAAAGCAATT
AGAGAAGCTGCCAAGAGGAATGACATCGGTTCTGCTAAGGCACTTGCAAA
AGAAATTGTAATGTCAAGAAAAGCTGTGAACCGTCTATATGAGAATAAAG
CCCAGCTTAATTCAATATCAATGCACCTCGGGGAAAGTGTTGCAATTGCT
CGTACTGTTGGTCATTTGTCCAAGAGTGCTGAAGTCATGAAACTTGTCAA
CAACCTCATGAAAGCTCCGGAAATGGCTGCCACAATGCAAGAATTTAGCA
AAGAAATGACCAAGGCTGGGGTTATTGAAGAAATAGTAAATGATGCCCTT
GACACAGCATTGGATTCAGAAGATATAGAAGAAGAGACTGAAGAAGAAGT
TGATAAGGTTCTTTCAGAAATAGCTGGTGAAACTGCTGCACAGCTTCCTG
AAGCTGTTAGGAAGGAAAGAGTCAGGGTACCTACCCAAAGAGAAAGCACT
TCGCATGAAGAAGAAGCTATAACAGAGGGTGCAGATGATGAGGAAGAGTT
AGAAGAGATAAGGGCGCGACTTGCCCGAGTGAGATCCTAA
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protein sequence of Tc10v2_p006980.1

>Tc10v2_p006980.1 ID=Tc10v2_p006980.1|Name=Tc10v2_p006980.1|organism=Theobroma cacao|type=polypeptide|length=230bp
MDKFKSMLKPKTNPQQLLRDWQRKLRQECRNIERQIRDVQREEKSVQKAI
REAAKRNDIGSAKALAKEIVMSRKAVNRLYENKAQLNSISMHLGESVAIA
RTVGHLSKSAEVMKLVNNLMKAPEMAATMQEFSKEMTKAGVIEEIVNDAL
DTALDSEDIEEETEEEVDKVLSEIAGETAAQLPEAVRKERVRVPTQREST
SHEEEAITEGADDEEELEEIRARLARVRS*
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