Tc10v2_t006210.1

Overview
NameTc10v2_t006210.1
Unique NameTc10v2_t006210.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1254
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 31 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
Productexopolygalacturonase
NotePolygalacturonase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586417
GenbankXM_018128793.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g006210Tc10v2_g006210Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p006210.1Tc10v2_p006210.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto497635auto497635Theobroma cacaoexon
exon-auto497636auto497636Theobroma cacaoexon
exon-auto497637auto497637Theobroma cacaoexon
exon-auto497638auto497638Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto497639auto497639Theobroma cacaoCDS
CDS-auto497640auto497640Theobroma cacaoCDS
CDS-auto497641auto497641Theobroma cacaoCDS
CDS-auto497642auto497642Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t006210.1 ID=Tc10v2_t006210.1|Name=Tc10v2_t006210.1|organism=Theobroma cacao|type=mRNA|length=1254bp
ATGTCAAATAACACATCAAGAAAAGAAAGGAAACAAAAAGCAGAAAGAAA
GATTGCAGTGGAACTGAATGTGCTAGCTCTATCTTTGTTATTTGTTTTAG
CATCAAATGCTAAAGCACAACCCAACAATGGTGTTTTTGATGTGATGAAT
TTTGGTGCAAAGGCAGGTGGAAAAACAGATATCAGTCAAGCATTGATGGC
TGCTTGGAGAGAGGCCTGCGCACTGGTTAGTCCTAGTAAAGTAGTGATTC
CAGAGGGGGAATATATGTTGAGCCAGGTGACTCTGGCAGGCCCTTGTAAA
GCTCCTGTGGAGGTTCAAGTTAGAGGAAACTTGAAGGCCCCCGCAGATCC
TAGCAAATTCAACAATGTGCCTAGTTGGGTTACTTTCCAACGCATCGATC
ACTTCACATTATCTGGGGCTGGAACCTTTGATGGCCAAGGTGGATATGCT
GCTTGGGCACAAAATGATTGCAAACAAAGTAAAAAGTGCAACAAACTTCC
CATTAATATAAGATTCAACTTCGTCACCAATGGATTAGTGAGGGACATAA
CCTCTGTGGATAGCAAACAGTTTCACATTAACCTGTTGGGTTGCAAAAAC
CTTACTTTTGCAAATATCACCATCAATGCACCTGATCAAAGTCCCAACAC
TGATGGAATTCATATCGGACGTTCGAGTGGGATTAACATTACTGATTCAA
GAATCTCAACCGGTGATGACTGTATCTCTCTTGGCGGTGGTAGCCAGAAC
ATTGCCATAACTAGAGTAACATGCGGACCAGGCCATGGCATCAGCGTCGG
AAGTCTTGGAAAATACAAGGATGAACCAGTTTTTGGCATCAATGTTGTGA
ATTGCGCTCTTATTAATACATCGAATGGAGTAAGGGTGAAAACTTGGCCA
GCTTCTTTGGAAGGCATTGCATCCGATATGCATTTTGAGGACATTGTTAT
GGTTAATGTCAGCAATCCTGTTCTCATCGATCAAGAATACTGCCCTAGTA
ATAAGTGCAACCTAAAGGCTCCATCGCGTGTTAAGATCAGCAATGTTAGC
TTCAAGAACATCAGGGGAACTTCAGCAACACAAGTTGCGGTTAAACTTGC
ATGTAGCAGCGGCATCCCATGTGAAAATGTGGAGATTGGAGACATTAATC
TTTCTTACATTGGAACAGAAGGCCCTGCTACTTCCCAGTGTTCTAATGTC
AAGCCTACTATCGCTGGCAGACAAACTCCACTTGCATGTGGCCTCATCGT
TTAA
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protein sequence of Tc10v2_p006210.1

>Tc10v2_p006210.1 ID=Tc10v2_p006210.1|Name=Tc10v2_p006210.1|organism=Theobroma cacao|type=polypeptide|length=418bp
MSNNTSRKERKQKAERKIAVELNVLALSLLFVLASNAKAQPNNGVFDVMN
FGAKAGGKTDISQALMAAWREACALVSPSKVVIPEGEYMLSQVTLAGPCK
APVEVQVRGNLKAPADPSKFNNVPSWVTFQRIDHFTLSGAGTFDGQGGYA
AWAQNDCKQSKKCNKLPINIRFNFVTNGLVRDITSVDSKQFHINLLGCKN
LTFANITINAPDQSPNTDGIHIGRSSGINITDSRISTGDDCISLGGGSQN
IAITRVTCGPGHGISVGSLGKYKDEPVFGINVVNCALINTSNGVRVKTWP
ASLEGIASDMHFEDIVMVNVSNPVLIDQEYCPSNKCNLKAPSRVKISNVS
FKNIRGTSATQVAVKLACSSGIPCENVEIGDINLSYIGTEGPATSQCSNV
KPTIAGRQTPLACGLIV*
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