Tc10v2_t005920.2

Overview
NameTc10v2_t005920.2
Unique NameTc10v2_t005920.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1308
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 22 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productchorismate synthase, chloroplastic, transcript variant X1
NoteChorismate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586384
GenbankXM_018129588.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g005920Tc10v2_g005920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p005920.2Tc10v2_p005920.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto497061auto497061Theobroma cacaoexon
exon-auto497062auto497062Theobroma cacaoexon
exon-auto497063auto497063Theobroma cacaoexon
exon-auto497064auto497064Theobroma cacaoexon
exon-auto497065auto497065Theobroma cacaoexon
exon-auto497066auto497066Theobroma cacaoexon
exon-auto497067auto497067Theobroma cacaoexon
exon-auto497068auto497068Theobroma cacaoexon
exon-auto497069auto497069Theobroma cacaoexon
exon-auto497070auto497070Theobroma cacaoexon
exon-auto497071auto497071Theobroma cacaoexon
exon-auto497072auto497072Theobroma cacaoexon
exon-auto497073auto497073Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto497074auto497074Theobroma cacaoCDS
CDS-auto497075auto497075Theobroma cacaoCDS
CDS-auto497076auto497076Theobroma cacaoCDS
CDS-auto497077auto497077Theobroma cacaoCDS
CDS-auto497078auto497078Theobroma cacaoCDS
CDS-auto497079auto497079Theobroma cacaoCDS
CDS-auto497080auto497080Theobroma cacaoCDS
CDS-auto497081auto497081Theobroma cacaoCDS
CDS-auto497082auto497082Theobroma cacaoCDS
CDS-auto497083auto497083Theobroma cacaoCDS
CDS-auto497084auto497084Theobroma cacaoCDS
CDS-auto497085auto497085Theobroma cacaoCDS
CDS-auto497086auto497086Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t005920.2 ID=Tc10v2_t005920.2|Name=Tc10v2_t005920.2|organism=Theobroma cacao|type=mRNA|length=1308bp
ATGGCTTCTTCTATTACTCCCAAGCCTTTCCTTGGAGCTACTAAACCCAA
TCCTTCTCTTTCTTCTGATCTCCAAAGACTCTCTTTTTCCTCTCTTCATA
TCTCAGTCAAACCAAGAACCCACAAGAAGCTTCAGATACAGGCAGCAGGG
AGCACATTTGGAAATTATTTCCGAGTTACAACATTTGGAGAATCACATGG
AGGTGGTGTTGGTTGTATAGTTGATGGATGCCCTCCTAGGATTCCTCTGT
CAGAAGCTGATTTGCAGTTTGATCTTGACCGAAGGAGGCCAGGTCAGAGC
CGAATTACTACCCCTAGGAAAGAGACTGACACATGCCGCATATATTCTGG
AGTTTCTGAAGGAGTGACTACTGGAACACCAATCCATGTATTTGTACCAA
ATACTGATCAGAGAGGACATGATTACAACGAAATGTCAATAGCTTATAGG
CCCTCTCATGCTGATGCCACTTATGACATGAAATATGGTGTCAGGGCAGT
GAAGGGTGGTGGTAGATCTTCAGCCAGAGAAACCATTGGGAGAGTTGCCC
CAGGGGCTATTGCTAAGAAAATTCTCCAGCAGTTTTCAGGAACTGAGGTT
CTTGCCTATGTCTCACAAGTTCACCAGGTTGTGCTCCCAGATGGTTCGGT
TGACCATGACACTCTAACTCTTGATCAGGTAGAGAGTAACATTGTACGGT
GCCCAAATCCTGAATATGCTGAGAAAATGATTGCTGCTATAGATGCTGTT
CGGACAAGAGGAGATTCTATTGGTGGTGTTGTCACGTGCATAGTAAGGAA
TGCCCCACGTGGCCTTGGTTCACCGGTTTTTGATAAACTTGAAGCGGAGC
TTGCTAAGGCTGTAATGTCGTTACCTGCAACCAAAGGGTTTGAGTTTGGC
AGTGGATTTGCAGGTACTTTTCTGACTGGTAGCGAACATAATGATGAGTT
CTTTACCGATGAACATGGAAAAATAAGGACAAGAACCAATCGCTCTGGTG
GGATACAGGGTGGAATATCCAATGGGGAAATTATAAATATGAGAGTAGCT
TTCAAGCCAACAGCTACCATTGGTAAGAAGCAGAACACAGTGACTCGAGA
AAAGAAAGAGATAGAACTAATCGCCCGTGGTCGTCATGATCCTTGCGTTG
TCCCCCGAGCGGTGCCTATGGTGGAAGCTATGGTAGCCCTTGTGCTTGTG
GACCAATTGATGGCACAATATGCACAATGTAATTTGTTCCCCATCAACCC
AGAGTTACAAGAACCCTTGAGCTTGAATTTCCCGAATTTTGAGCCGGCAA
ATATATAG
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protein sequence of Tc10v2_p005920.2

>Tc10v2_p005920.2 ID=Tc10v2_p005920.2|Name=Tc10v2_p005920.2|organism=Theobroma cacao|type=polypeptide|length=436bp
MASSITPKPFLGATKPNPSLSSDLQRLSFSSLHISVKPRTHKKLQIQAAG
STFGNYFRVTTFGESHGGGVGCIVDGCPPRIPLSEADLQFDLDRRRPGQS
RITTPRKETDTCRIYSGVSEGVTTGTPIHVFVPNTDQRGHDYNEMSIAYR
PSHADATYDMKYGVRAVKGGGRSSARETIGRVAPGAIAKKILQQFSGTEV
LAYVSQVHQVVLPDGSVDHDTLTLDQVESNIVRCPNPEYAEKMIAAIDAV
RTRGDSIGGVVTCIVRNAPRGLGSPVFDKLEAELAKAVMSLPATKGFEFG
SGFAGTFLTGSEHNDEFFTDEHGKIRTRTNRSGGIQGGISNGEIINMRVA
FKPTATIGKKQNTVTREKKEIELIARGRHDPCVVPRAVPMVEAMVALVLV
DQLMAQYAQCNLFPINPELQEPLSLNFPNFEPANI*
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