Tc10v2_t005920.1

Overview
NameTc10v2_t005920.1
Unique NameTc10v2_t005920.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1137
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Productchorismate synthase, chloroplastic, transcript variant X2
NoteChorismate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586384
GenbankXM_018129589.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g005920Tc10v2_g005920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p005920.1Tc10v2_p005920.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto497035auto497035Theobroma cacaoexon
exon-auto497036auto497036Theobroma cacaoexon
exon-auto497037auto497037Theobroma cacaoexon
exon-auto497038auto497038Theobroma cacaoexon
exon-auto497039auto497039Theobroma cacaoexon
exon-auto497040auto497040Theobroma cacaoexon
exon-auto497041auto497041Theobroma cacaoexon
exon-auto497042auto497042Theobroma cacaoexon
exon-auto497043auto497043Theobroma cacaoexon
exon-auto497044auto497044Theobroma cacaoexon
exon-auto497045auto497045Theobroma cacaoexon
exon-auto497046auto497046Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto497047auto497047Theobroma cacaoCDS
CDS-auto497048auto497048Theobroma cacaoCDS
CDS-auto497049auto497049Theobroma cacaoCDS
CDS-auto497050auto497050Theobroma cacaoCDS
CDS-auto497051auto497051Theobroma cacaoCDS
CDS-auto497052auto497052Theobroma cacaoCDS
CDS-auto497053auto497053Theobroma cacaoCDS
CDS-auto497054auto497054Theobroma cacaoCDS
CDS-auto497055auto497055Theobroma cacaoCDS
CDS-auto497056auto497056Theobroma cacaoCDS
CDS-auto497057auto497057Theobroma cacaoCDS
CDS-auto497058auto497058Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t005920.1 ID=Tc10v2_t005920.1|Name=Tc10v2_t005920.1|organism=Theobroma cacao|type=mRNA|length=1137bp
ATGGCTTCTTCTATTACTCCCAAGCCTTTCCTTGGAGCTACTAAACCCAA
TCCTTCTCTTTCTTCTGATCTCCAAAGACTCTCTTTTTCCTCTCTTCATA
TCTCAGTCAAACCAAGAACCCACAAGAAGCTTCAGATACAGGCAGCAGGG
AGCACATTTGGAAATTATTTCCGAGTTACAACATTTGGAGAATCACATGG
AGGTGGTGTTGGTTGTATAGTTGATGGATGCCCTCCTAGGATTCCTCTGT
CAGAAGCTGATTTGCAGTTTGATCTTGACCGAAGGAGGCCAGGTCAGAGC
CGAATTACTACCCCTAGGAAAGAGACTGACACATGCCGCATATATTCTGG
AGTTTCTGAAGGAGTGACTACTGGAACACCAATCCATGTATTTGTACCAA
ATACTGATCAGAGAGGACATGATTACAACGAAATGTCAATAGCTTATAGG
CCCTCTCATGCTGATGCCACTTATGACATGAAATATGGTGTCAGGGCAGT
GAAGGGTGGTGGTAGATCTTCAGCCAGAGAAACCATTGGGAGAGTTGCCC
CAGGGGCTATTGCTAAGAAAATTCTCCAGCAGTTTTCAGGAACTGAGGTT
CTTGCCTATGTCTCACAAGTTCACCAGGTTGTGCTCCCAGATGGTTCGGT
TGACCATGACACTCTAACTCTTGATCAGGTAGAGAGTAACATTGTACGGT
GCCCAAATCCTGAATATGCTGAGAAAATGATTGCTGCTATAGATGCTGTT
CGGACAAGAGGAGATTCTATTGGTGGTGTTGTCACGTGCATAGTAAGGAA
TGCCCCACGTGGCCTTGGTTCACCGGTTTTTGATAAACTTGAAGCGGAGC
TTGCTAAGGCTGTAATGTCGTTACCTGCAACCAAAGGGTTTGAGTTTGGC
AGTGGATTTGCAGGTACTTTTCTGACTGGTAGCGAACATAATGATGAGTT
CTTTACCGATGAACATGGAAAAATAAGGACAAGAACCAATCGCTCTGGTG
GGATACAGGGTGGAATATCCAATGGGGAAATTATAAATATGAGAGTAGCT
TTCAAGCCAACAGCTACCATTGAAGAAGCAGAACACAGTGACTCGAGAAA
AGAAAGAGATAGAACTAATCGCCCGTGGTCGTCATGA
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protein sequence of Tc10v2_p005920.1

>Tc10v2_p005920.1 ID=Tc10v2_p005920.1|Name=Tc10v2_p005920.1|organism=Theobroma cacao|type=polypeptide|length=379bp
MASSITPKPFLGATKPNPSLSSDLQRLSFSSLHISVKPRTHKKLQIQAAG
STFGNYFRVTTFGESHGGGVGCIVDGCPPRIPLSEADLQFDLDRRRPGQS
RITTPRKETDTCRIYSGVSEGVTTGTPIHVFVPNTDQRGHDYNEMSIAYR
PSHADATYDMKYGVRAVKGGGRSSARETIGRVAPGAIAKKILQQFSGTEV
LAYVSQVHQVVLPDGSVDHDTLTLDQVESNIVRCPNPEYAEKMIAAIDAV
RTRGDSIGGVVTCIVRNAPRGLGSPVFDKLEAELAKAVMSLPATKGFEFG
SGFAGTFLTGSEHNDEFFTDEHGKIRTRTNRSGGIQGGISNGEIINMRVA
FKPTATIEEAEHSDSRKERDRTNRPWSS*
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