Tc10v2_t005730.1

Overview
NameTc10v2_t005730.1
Unique NameTc10v2_t005730.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length789
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productgeneral transcription factor IIF subunit 2
NoteJHL18I08.10 protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586361
GenbankXM_007009717.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g005730Tc10v2_g005730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p005730.1Tc10v2_p005730.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto496455auto496455Theobroma cacaoexon
exon-auto496456auto496456Theobroma cacaoexon
exon-auto496457auto496457Theobroma cacaoexon
exon-auto496458auto496458Theobroma cacaoexon
exon-auto496459auto496459Theobroma cacaoexon
exon-auto496460auto496460Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto496461auto496461Theobroma cacaoCDS
CDS-auto496462auto496462Theobroma cacaoCDS
CDS-auto496463auto496463Theobroma cacaoCDS
CDS-auto496464auto496464Theobroma cacaoCDS
CDS-auto496465auto496465Theobroma cacaoCDS
CDS-auto496466auto496466Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t005730.1 ID=Tc10v2_t005730.1|Name=Tc10v2_t005730.1|organism=Theobroma cacao|type=mRNA|length=789bp
ATGGAAAACAAGGATAGCTATCTAGAAACAAGCAAAGCTGAAAGATCAAT
GTGGTTAATGAAGTGCCCTGCATTGGTTTCACGCTCTTTCAAGACCCCCC
AGCCCTCTTCCATTTCCACTTCTTCTTCTCCTCCTACACCTCAAGCTGTT
GCCAAAGTTATTCTTTCCATTGACCCTCGCGTTTCCAATGATGATAATGA
CTCTTCTTCTCCTCAGTTTACCATGGAATTGGTTGGCACAGAAATTCGAG
ATGTACCCAAGCGTTATTCCATGGAAATGTCAAAAGACCTTGTTCCAATG
TCTGTGTTTTCTGAGTCATCCCAAGGAAAGCTTTCTGTTGAGGGAAAAAT
ACTAAACAAGTTTGACATGAGACCTCATGATGAAAACATTGAGAACTATG
GGAAACTCTGCCGTGAAAGGACTAATAAATATATGACCAAATCCAGACAG
ATACAGGTCATCGATAATGATAACGGTACTCACATGAGGCCTATGCCAGG
GATGATGATTGCTACTGTATTCAATGAAAAGAAGAAGACACCTACCAAGA
CATCAGAGACGAAAAGAACAAGGAGGGATCGTGGAGAGATGGAAGATATT
ATGTTTAAGCTCTTTGAAAGGCAACCGAATTGGACTTTAAGACAACTGAT
TCAAGAGACAGACCAACCTGAACAATTCCTGAAAGATATACTTAAAGACC
TCTGTGTCTACAACAACAAGGGAACTAATCAAGGATCATATGAGCTGAAG
CCAGAATACAAGAAAGCAAGCAACGATACTAACCCTTAA
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protein sequence of Tc10v2_p005730.1

>Tc10v2_p005730.1 ID=Tc10v2_p005730.1|Name=Tc10v2_p005730.1|organism=Theobroma cacao|type=polypeptide|length=263bp
MENKDSYLETSKAERSMWLMKCPALVSRSFKTPQPSSISTSSSPPTPQAV
AKVILSIDPRVSNDDNDSSSPQFTMELVGTEIRDVPKRYSMEMSKDLVPM
SVFSESSQGKLSVEGKILNKFDMRPHDENIENYGKLCRERTNKYMTKSRQ
IQVIDNDNGTHMRPMPGMMIATVFNEKKKTPTKTSETKRTRRDRGEMEDI
MFKLFERQPNWTLRQLIQETDQPEQFLKDILKDLCVYNNKGTNQGSYELK
PEYKKASNDTNP*
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