Tc10v2_t005710.2

Overview
NameTc10v2_t005710.2
Unique NameTc10v2_t005710.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2589
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
ProductE3 SUMO-protein ligase SIZ1, transcript variant X2
NoteE3 SUMO-protein ligase SIZ1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586359
GenbankXM_018129179.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g005710Tc10v2_g005710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p005710.2Tc10v2_p005710.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto496339auto496339Theobroma cacaoexon
exon-auto496340auto496340Theobroma cacaoexon
exon-auto496341auto496341Theobroma cacaoexon
exon-auto496342auto496342Theobroma cacaoexon
exon-auto496343auto496343Theobroma cacaoexon
exon-auto496344auto496344Theobroma cacaoexon
exon-auto496345auto496345Theobroma cacaoexon
exon-auto496346auto496346Theobroma cacaoexon
exon-auto496347auto496347Theobroma cacaoexon
exon-auto496348auto496348Theobroma cacaoexon
exon-auto496349auto496349Theobroma cacaoexon
exon-auto496350auto496350Theobroma cacaoexon
exon-auto496351auto496351Theobroma cacaoexon
exon-auto496352auto496352Theobroma cacaoexon
exon-auto496353auto496353Theobroma cacaoexon
exon-auto496354auto496354Theobroma cacaoexon
exon-auto496355auto496355Theobroma cacaoexon
exon-auto496356auto496356Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto496357auto496357Theobroma cacaoCDS
CDS-auto496358auto496358Theobroma cacaoCDS
CDS-auto496359auto496359Theobroma cacaoCDS
CDS-auto496360auto496360Theobroma cacaoCDS
CDS-auto496361auto496361Theobroma cacaoCDS
CDS-auto496362auto496362Theobroma cacaoCDS
CDS-auto496363auto496363Theobroma cacaoCDS
CDS-auto496364auto496364Theobroma cacaoCDS
CDS-auto496365auto496365Theobroma cacaoCDS
CDS-auto496366auto496366Theobroma cacaoCDS
CDS-auto496367auto496367Theobroma cacaoCDS
CDS-auto496368auto496368Theobroma cacaoCDS
CDS-auto496369auto496369Theobroma cacaoCDS
CDS-auto496370auto496370Theobroma cacaoCDS
CDS-auto496371auto496371Theobroma cacaoCDS
CDS-auto496372auto496372Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t005710.2 ID=Tc10v2_t005710.2|Name=Tc10v2_t005710.2|organism=Theobroma cacao|type=mRNA|length=2589bp
ATGGATTTGCTGTCGACTTGCAGGAGCCAGTTGGCTTACTTCCGAATTAA
AGAGCTCAAGGATGTTCTTACCCAGCTTGGTATTTCAAAACAAGGGAAGA
AGCAGGATTTGATGGACAGAATATTAGGCTTGATTTCAGATGAAGAAGTT
TCTAGCACACATGGGTCAGCAAAGAAAAAAATTATTGGGAAGGAAGGAGT
AGCAAAATTAATTGATGATGCTTACAGAAAAATGCAGATAGCTGATGAGT
CTGATTTAGCAACAAGGAGACAGACTTCTTCTTTAGATATTTGTAATGTG
AAGCATAAAGTGGAAGCTGAAGATTTTTCATATTCGGCTGTGAAGATTTG
CTGTCCTTGTGGAAGTTCATTGCATAGTGACCCCATGATACAGTGCATTG
ACCCAGGATGTCGAGTTCAGCAGCATGTTAGCTGTGTTATTATTCCAGAG
AAGCCTATGGAAGTCATTCCATCAGTTCCAGCTATATTTCATTGTGAAAT
GTGTCGCATCAGTCGTGCAGATCCCTTTTGTGTCACTGTGGCGCATTTGA
TATCCCCTGTGAAGTTAATAGCTGCAAATATTCCATCTGATGGGACAAAT
CCCCTACTGAACGTGGAAAAAACATTTCACCTGACAAAGGCAGATAGTGA
TTCATTACAGAACACTGAATATGATATTCAGGCTTGGTGTGTTCTTCTCA
ATGATAATGTTTCATTTAGGATGCAATGGCCACAATATGCTGATTTACAT
GTTAATGGTTTTGCAGTAAGAACTCTTAACAGACCTGGTTCACAGTTGTT
AGGTGCTAATGGTCGCGATGATGGTGCACTGATCACATTATATGTTGTGG
AGGGCATTAATAAAATTTCTTTATCGGCATGTGATGCTCGCTCTTTCTGT
TTTGGAGTCAGACTTGTGAAGCGTCATACAATAGAACAGGTTCTCGGTTT
GATTCCTAAAGAAGCAGATGGTGAATCCTTCAAAGATGCACTTGCCCGTG
TTTGTCGTTGCGTCGGTGGTGGGATGCGCACTGCAAATGAAGATAGTGAT
AGTGATTTAGAAGTCATTGCAGATACAATTACAGTTAACCTTCGCTGTCC
TATGAGTGGCTCCAGAATAAAGGTCGCTGGCAGATTTAAACCATGTGTTC
ACATGGGATGTTTTGATCTTGAAACTTTTGTGGAGCTTAATCAGCGCTCA
AGGAAGTGGCAGTGTCCCATCTGTCTCAAGAACTATTCCCTAGAAGATAT
CATTATTGATCCATATTTCAATCGAATCACAACTATGATGCTGCACTGTG
GAGAAGATGTAACTGACATTGAGGTGAAGCCTGATGGTTCTTGGACCGTT
AAGACCAAAGATGAGCTTAGTGATCTTGGAAAATGGCATTTCCCTGACGG
TTCACTTCATGGAGATATGAATGAAGTCATATCCAACTCAGAGACCTGGA
GGCAGATCAATAAGCATGAAAAGTCAGGAAATCCTAATCTTGAAAATGGG
ACAGAAGGAGGGAAAATAGAAGCAAGTGAACACCAGCATCTCCCCTTGCG
AAATCCAAAAGAGGAAGATTTAGAAAACTTTTGTCAGATGGTCATAACAT
TGAGCAGTAGTGCCAGTGGAAGCGGTAGAGATGATGAAAACCCAAGTATT
AATCAGGATTATGGTAGATATGATTCTATCCCTGGCATGAATGGAAATGA
GATCAATTCTATTCGTCACAATTTTAATTCAATTCTTAGTACTGAAAATC
AAAGTTATGGAGCAATAGGGGAGCCAGACATCATTATTGTCAGTGATTCA
GAAGAAGAGGATGTCAATTTGGTTTCTTGTCATACAGATTACAAATCTTG
TGTCCTGAATGATTGTGGGGCTTTGTCTGCCCCCCCAAGAATCGAACAAT
CATATCTGGAAAACCCTGTTCCTGATTCTGGTATAAGTTCTTGTTTGGAT
CTCTTCAATGACAGTGGAAAAGATGTTGGAATGTCTGACTGGGCATATTC
TTCTGGTACCCAAGCAAGTTCAAGGTTCCAACTGTTTGGTGAAGATTCTG
ATGTCTCAGATGTTCTTATTGATTTGGAGCGTTCTGGGGTTACATGCTCT
GGACCTATGAACAGTTACACATTGGCTTCAAAGTTAACCATGAACTCCAG
CAGACAGGTTCCTGATTCTTCTATTTTCAGTACCAATATTAATGAAGATG
ATGACCTGGTTGATAATCCCTTTGCATTTGTAAGTGTGGACCCCTCTCTA
CAAAATTTCCTTTCTACTCAACCAGTTGGAACCTTGGCAGAAACTGATCT
AGGACACTGTCCCCCCATATCAAACAGTACCCATACTGAGGATTGGATTT
CTCTTAGGCTTGGCTGCAATGGCGAGAGTATTGGCAGTAGTGTTGGTACT
ATTGCTCAGTCTGCTGTTTCAAAGGGGTTGGATTTAATAAATGATTGTAG
ATCAAATGAAGGGATGAATGACAAAGCCAGGTCTAACAGGATAGACAATA
GGAAAAAGTTAAATGGCCCTTTCTCATTTCCTCGCCAGCCAAGGTCTGTC
AGGCGACGGGGTTACTCAATAGCTTCAGACTCAAATTAG
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protein sequence of Tc10v2_p005710.2

>Tc10v2_p005710.2 ID=Tc10v2_p005710.2|Name=Tc10v2_p005710.2|organism=Theobroma cacao|type=polypeptide|length=863bp
MDLLSTCRSQLAYFRIKELKDVLTQLGISKQGKKQDLMDRILGLISDEEV
SSTHGSAKKKIIGKEGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNV
KHKVEAEDFSYSAVKICCPCGSSLHSDPMIQCIDPGCRVQQHVSCVIIPE
KPMEVIPSVPAIFHCEMCRISRADPFCVTVAHLISPVKLIAANIPSDGTN
PLLNVEKTFHLTKADSDSLQNTEYDIQAWCVLLNDNVSFRMQWPQYADLH
VNGFAVRTLNRPGSQLLGANGRDDGALITLYVVEGINKISLSACDARSFC
FGVRLVKRHTIEQVLGLIPKEADGESFKDALARVCRCVGGGMRTANEDSD
SDLEVIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLETFVELNQRS
RKWQCPICLKNYSLEDIIIDPYFNRITTMMLHCGEDVTDIEVKPDGSWTV
KTKDELSDLGKWHFPDGSLHGDMNEVISNSETWRQINKHEKSGNPNLENG
TEGGKIEASEHQHLPLRNPKEEDLENFCQMVITLSSSASGSGRDDENPSI
NQDYGRYDSIPGMNGNEINSIRHNFNSILSTENQSYGAIGEPDIIIVSDS
EEEDVNLVSCHTDYKSCVLNDCGALSAPPRIEQSYLENPVPDSGISSCLD
LFNDSGKDVGMSDWAYSSGTQASSRFQLFGEDSDVSDVLIDLERSGVTCS
GPMNSYTLASKLTMNSSRQVPDSSIFSTNINEDDDLVDNPFAFVSVDPSL
QNFLSTQPVGTLAETDLGHCPPISNSTHTEDWISLRLGCNGESIGSSVGT
IAQSAVSKGLDLINDCRSNEGMNDKARSNRIDNRKKLNGPFSFPRQPRSV
RRRGYSIASDSN*
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