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Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 1 EST, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns |
Product | E3 SUMO-protein ligase SIZ1, transcript variant X2 |
Note | E3 SUMO-protein ligase SIZ1 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc10v2_t005710.2 ID=Tc10v2_t005710.2|Name=Tc10v2_t005710.2|organism=Theobroma cacao|type=mRNA|length=2589bp ATGGATTTGCTGTCGACTTGCAGGAGCCAGTTGGCTTACTTCCGAATTAA AGAGCTCAAGGATGTTCTTACCCAGCTTGGTATTTCAAAACAAGGGAAGA AGCAGGATTTGATGGACAGAATATTAGGCTTGATTTCAGATGAAGAAGTT TCTAGCACACATGGGTCAGCAAAGAAAAAAATTATTGGGAAGGAAGGAGT AGCAAAATTAATTGATGATGCTTACAGAAAAATGCAGATAGCTGATGAGT CTGATTTAGCAACAAGGAGACAGACTTCTTCTTTAGATATTTGTAATGTG AAGCATAAAGTGGAAGCTGAAGATTTTTCATATTCGGCTGTGAAGATTTG CTGTCCTTGTGGAAGTTCATTGCATAGTGACCCCATGATACAGTGCATTG ACCCAGGATGTCGAGTTCAGCAGCATGTTAGCTGTGTTATTATTCCAGAG AAGCCTATGGAAGTCATTCCATCAGTTCCAGCTATATTTCATTGTGAAAT GTGTCGCATCAGTCGTGCAGATCCCTTTTGTGTCACTGTGGCGCATTTGA TATCCCCTGTGAAGTTAATAGCTGCAAATATTCCATCTGATGGGACAAAT CCCCTACTGAACGTGGAAAAAACATTTCACCTGACAAAGGCAGATAGTGA TTCATTACAGAACACTGAATATGATATTCAGGCTTGGTGTGTTCTTCTCA ATGATAATGTTTCATTTAGGATGCAATGGCCACAATATGCTGATTTACAT GTTAATGGTTTTGCAGTAAGAACTCTTAACAGACCTGGTTCACAGTTGTT AGGTGCTAATGGTCGCGATGATGGTGCACTGATCACATTATATGTTGTGG AGGGCATTAATAAAATTTCTTTATCGGCATGTGATGCTCGCTCTTTCTGT TTTGGAGTCAGACTTGTGAAGCGTCATACAATAGAACAGGTTCTCGGTTT GATTCCTAAAGAAGCAGATGGTGAATCCTTCAAAGATGCACTTGCCCGTG TTTGTCGTTGCGTCGGTGGTGGGATGCGCACTGCAAATGAAGATAGTGAT AGTGATTTAGAAGTCATTGCAGATACAATTACAGTTAACCTTCGCTGTCC TATGAGTGGCTCCAGAATAAAGGTCGCTGGCAGATTTAAACCATGTGTTC ACATGGGATGTTTTGATCTTGAAACTTTTGTGGAGCTTAATCAGCGCTCA AGGAAGTGGCAGTGTCCCATCTGTCTCAAGAACTATTCCCTAGAAGATAT CATTATTGATCCATATTTCAATCGAATCACAACTATGATGCTGCACTGTG GAGAAGATGTAACTGACATTGAGGTGAAGCCTGATGGTTCTTGGACCGTT AAGACCAAAGATGAGCTTAGTGATCTTGGAAAATGGCATTTCCCTGACGG TTCACTTCATGGAGATATGAATGAAGTCATATCCAACTCAGAGACCTGGA GGCAGATCAATAAGCATGAAAAGTCAGGAAATCCTAATCTTGAAAATGGG ACAGAAGGAGGGAAAATAGAAGCAAGTGAACACCAGCATCTCCCCTTGCG AAATCCAAAAGAGGAAGATTTAGAAAACTTTTGTCAGATGGTCATAACAT TGAGCAGTAGTGCCAGTGGAAGCGGTAGAGATGATGAAAACCCAAGTATT AATCAGGATTATGGTAGATATGATTCTATCCCTGGCATGAATGGAAATGA GATCAATTCTATTCGTCACAATTTTAATTCAATTCTTAGTACTGAAAATC AAAGTTATGGAGCAATAGGGGAGCCAGACATCATTATTGTCAGTGATTCA GAAGAAGAGGATGTCAATTTGGTTTCTTGTCATACAGATTACAAATCTTG TGTCCTGAATGATTGTGGGGCTTTGTCTGCCCCCCCAAGAATCGAACAAT CATATCTGGAAAACCCTGTTCCTGATTCTGGTATAAGTTCTTGTTTGGAT CTCTTCAATGACAGTGGAAAAGATGTTGGAATGTCTGACTGGGCATATTC TTCTGGTACCCAAGCAAGTTCAAGGTTCCAACTGTTTGGTGAAGATTCTG ATGTCTCAGATGTTCTTATTGATTTGGAGCGTTCTGGGGTTACATGCTCT GGACCTATGAACAGTTACACATTGGCTTCAAAGTTAACCATGAACTCCAG CAGACAGGTTCCTGATTCTTCTATTTTCAGTACCAATATTAATGAAGATG ATGACCTGGTTGATAATCCCTTTGCATTTGTAAGTGTGGACCCCTCTCTA CAAAATTTCCTTTCTACTCAACCAGTTGGAACCTTGGCAGAAACTGATCT AGGACACTGTCCCCCCATATCAAACAGTACCCATACTGAGGATTGGATTT CTCTTAGGCTTGGCTGCAATGGCGAGAGTATTGGCAGTAGTGTTGGTACT ATTGCTCAGTCTGCTGTTTCAAAGGGGTTGGATTTAATAAATGATTGTAG ATCAAATGAAGGGATGAATGACAAAGCCAGGTCTAACAGGATAGACAATA GGAAAAAGTTAAATGGCCCTTTCTCATTTCCTCGCCAGCCAAGGTCTGTC AGGCGACGGGGTTACTCAATAGCTTCAGACTCAAATTAG back to topprotein sequence of Tc10v2_p005710.2 >Tc10v2_p005710.2 ID=Tc10v2_p005710.2|Name=Tc10v2_p005710.2|organism=Theobroma cacao|type=polypeptide|length=863bp
MDLLSTCRSQLAYFRIKELKDVLTQLGISKQGKKQDLMDRILGLISDEEV SSTHGSAKKKIIGKEGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNV KHKVEAEDFSYSAVKICCPCGSSLHSDPMIQCIDPGCRVQQHVSCVIIPE KPMEVIPSVPAIFHCEMCRISRADPFCVTVAHLISPVKLIAANIPSDGTN PLLNVEKTFHLTKADSDSLQNTEYDIQAWCVLLNDNVSFRMQWPQYADLH VNGFAVRTLNRPGSQLLGANGRDDGALITLYVVEGINKISLSACDARSFC FGVRLVKRHTIEQVLGLIPKEADGESFKDALARVCRCVGGGMRTANEDSD SDLEVIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLETFVELNQRS RKWQCPICLKNYSLEDIIIDPYFNRITTMMLHCGEDVTDIEVKPDGSWTV KTKDELSDLGKWHFPDGSLHGDMNEVISNSETWRQINKHEKSGNPNLENG TEGGKIEASEHQHLPLRNPKEEDLENFCQMVITLSSSASGSGRDDENPSI NQDYGRYDSIPGMNGNEINSIRHNFNSILSTENQSYGAIGEPDIIIVSDS EEEDVNLVSCHTDYKSCVLNDCGALSAPPRIEQSYLENPVPDSGISSCLD LFNDSGKDVGMSDWAYSSGTQASSRFQLFGEDSDVSDVLIDLERSGVTCS GPMNSYTLASKLTMNSSRQVPDSSIFSTNINEDDDLVDNPFAFVSVDPSL QNFLSTQPVGTLAETDLGHCPPISNSTHTEDWISLRLGCNGESIGSSVGT IAQSAVSKGLDLINDCRSNEGMNDKARSNRIDNRKKLNGPFSFPRQPRSV RRRGYSIASDSN* back to top
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