Tc10v2_t005190.2

Overview
NameTc10v2_t005190.2
Unique NameTc10v2_t005190.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1416
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic, transcript variant X1
NoteRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586294
GenbankXM_018129516.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g005190Tc10v2_g005190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p005190.2Tc10v2_p005190.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto494784auto494784Theobroma cacaoexon
exon-auto494785auto494785Theobroma cacaoexon
exon-auto494786auto494786Theobroma cacaoexon
exon-auto494787auto494787Theobroma cacaoexon
exon-auto494788auto494788Theobroma cacaoexon
exon-auto494789auto494789Theobroma cacaoexon
exon-auto494790auto494790Theobroma cacaoexon
exon-auto494791auto494791Theobroma cacaoexon
exon-auto494792auto494792Theobroma cacaoexon
exon-auto494793auto494793Theobroma cacaoexon
exon-auto494794auto494794Theobroma cacaoexon
exon-auto494795auto494795Theobroma cacaoexon
exon-auto494796auto494796Theobroma cacaoexon
exon-auto494797auto494797Theobroma cacaoexon
exon-auto494798auto494798Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto494799auto494799Theobroma cacaoCDS
CDS-auto494800auto494800Theobroma cacaoCDS
CDS-auto494801auto494801Theobroma cacaoCDS
CDS-auto494802auto494802Theobroma cacaoCDS
CDS-auto494803auto494803Theobroma cacaoCDS
CDS-auto494804auto494804Theobroma cacaoCDS
CDS-auto494805auto494805Theobroma cacaoCDS
CDS-auto494806auto494806Theobroma cacaoCDS
CDS-auto494807auto494807Theobroma cacaoCDS
CDS-auto494808auto494808Theobroma cacaoCDS
CDS-auto494809auto494809Theobroma cacaoCDS
CDS-auto494810auto494810Theobroma cacaoCDS
CDS-auto494811auto494811Theobroma cacaoCDS
CDS-auto494812auto494812Theobroma cacaoCDS
CDS-auto494813auto494813Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t005190.2 ID=Tc10v2_t005190.2|Name=Tc10v2_t005190.2|organism=Theobroma cacao|type=mRNA|length=1416bp
ATGCTTCAGGGCGGTCATCGACTCTCAAAGCTTTGGCGGTCGCCAACAAC
TCCACTCTTCAACCTCTCTCACCGTCTCCTCATTGGCTTTAAATTCTCCT
CTCTATCTCAAGCTAAGGAATTAGATTCTTTGGACGAAGAATGTGAGGAA
TTTTTGCCTTGGTTGGAGCGAAAGGCTGGGGTTAAAATTTCTTCAGTGCT
CTCTATTGGGAAATCCGCATATGGCAGGTCACTGTTTGCTTCTGAGATCA
TCCGATCTGGGGATTGCATATTGAAAGTTCCTTATAGTGTGCAAATAGCA
CCAGACAATCTTCTTCCAAAGATTAAAGCTGCACTAAGTAATAAAGTTGG
GACTGTTGCAAAGCTTGCTATTATCCTTTTAGTTGAGCAAAAAATGGGCC
AGGATTCTGAATGGGCCTCTTACATCAGTTGCCTTCCTCAGCATGGGGAA
ATCCATAGCACGATTTTCTGGAGTGAATACGAGTTGGATATGATTCGTCA
AAGCTCAGTATATCAGGAAACAATGAATCAAAAATCTAAAATAGAAGAGG
ATTTTGCTGCAGTTGTACCTGCCCTTGAACAATTCCCTGAAATTTTTGAA
AGCTTCACACTTAAGGATTTCATGCGTGCATATTTCTTAGTAACATCTCG
AGCCTGGGAAAGCACAAAAGGCCTGTCTCTGATTCCATTTACAGATTTTA
TGAATCATGACGGGGTTTCAGACTCAATTGTATTATTTGATGAAGATAAA
AAGTTGTCAGAGGTTATTGCTGATCGTAATTACGCTCCTGGTCAAGAGGT
ACTGATAAATTATGGAAACTTTCCAAATGCAACGCTGCTGCTGGACTTTG
GTTTTACACTTCCATACAACATTCATGACCAGGTACAAATCAACTTCAAT
ATACCATATCATGATAGTCTACGTGAAATGAAGTTGGAACTTCTGCAACA
ACATTCTACACCAAAAATTAAAGATGCAATTAATTGTTCTGAAGATACTT
TCATAATCAAAGAAGTTAGGTCTCCTAGAGGAAAGGGGAAGGGTCTTCCA
CAGTCGTTACGTGCATTTGCTCGTGTTTTATGTTGTGCCTCTCCAGAAGA
ACTTAGTGACTTGGCCATGGAAGCTGCACAAATTGATGGCCGGTTGGCTC
GGCGGCCTCTGAAGGACAGCCGGAGAGAGTTGCTGGCACATCAGATGTTA
TTATCTCACATCACTCACTTAATGCAGAAATATGATGTAGCCATCAAGTC
ACTTGCTCCTGCTAATTTCCCCTCAATGAGTAAGAAATTTGCTCTTAGGA
GGCAAATGGCTCAAGATCTCCTTACCGGTGATCTTCGCGTCCTGAAGTCT
GCATCCACATGGTTGAACAATTACTGTGCAGCCCTGAGAGCAACAATCCA
CTGTCAGAGTCAGTGA
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protein sequence of Tc10v2_p005190.2

>Tc10v2_p005190.2 ID=Tc10v2_p005190.2|Name=Tc10v2_p005190.2|organism=Theobroma cacao|type=polypeptide|length=472bp
MLQGGHRLSKLWRSPTTPLFNLSHRLLIGFKFSSLSQAKELDSLDEECEE
FLPWLERKAGVKISSVLSIGKSAYGRSLFASEIIRSGDCILKVPYSVQIA
PDNLLPKIKAALSNKVGTVAKLAIILLVEQKMGQDSEWASYISCLPQHGE
IHSTIFWSEYELDMIRQSSVYQETMNQKSKIEEDFAAVVPALEQFPEIFE
SFTLKDFMRAYFLVTSRAWESTKGLSLIPFTDFMNHDGVSDSIVLFDEDK
KLSEVIADRNYAPGQEVLINYGNFPNATLLLDFGFTLPYNIHDQVQINFN
IPYHDSLREMKLELLQQHSTPKIKDAINCSEDTFIIKEVRSPRGKGKGLP
QSLRAFARVLCCASPEELSDLAMEAAQIDGRLARRPLKDSRRELLAHQML
LSHITHLMQKYDVAIKSLAPANFPSMSKKFALRRQMAQDLLTGDLRVLKS
ASTWLNNYCAALRATIHCQSQ*
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