Tc10v2_t004330.1

Overview
NameTc10v2_t004330.1
Unique NameTc10v2_t004330.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length747
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductpsbP-like protein 1, chloroplastic
NotePsbP-like protein 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586194
GenbankXM_007009431.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g004330Tc10v2_g004330Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p004330.1Tc10v2_p004330.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto493689auto493689Theobroma cacaoexon
exon-auto493690auto493690Theobroma cacaoexon
exon-auto493691auto493691Theobroma cacaoexon
exon-auto493692auto493692Theobroma cacaoexon
exon-auto493693auto493693Theobroma cacaoexon
exon-auto493694auto493694Theobroma cacaoexon
exon-auto493695auto493695Theobroma cacaoexon
exon-auto493696auto493696Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto493697auto493697Theobroma cacaoCDS
CDS-auto493698auto493698Theobroma cacaoCDS
CDS-auto493699auto493699Theobroma cacaoCDS
CDS-auto493700auto493700Theobroma cacaoCDS
CDS-auto493701auto493701Theobroma cacaoCDS
CDS-auto493702auto493702Theobroma cacaoCDS
CDS-auto493703auto493703Theobroma cacaoCDS
CDS-auto493704auto493704Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t004330.1 ID=Tc10v2_t004330.1|Name=Tc10v2_t004330.1|organism=Theobroma cacao|type=mRNA|length=747bp
ATGGCAGCTTTGCAGAATTCAGTGCCTTCTCTCCATCATACATTGTTCAT
TAATTTCTTTCCTCAGAAAGGATTGCGGAAGCATCATCATGGTGCATTTC
TTTGCTGTAAAAGAGGTGTTTCTGTTCATGTAAGGGCTGAGCAGTCATCA
TCAGCTGCAGATTCTTCCAGCTCTTCTCACTTTCAAGATAGTTGTGGGAG
ACGCCAAATGATTGCTGCTGGCATCACTGGTCCTTTGGTTTCAATTGTTG
ACCAAACTCCTATTGCATTTGCTGCAGAAACGAAAAAGGGTTTTCTCTCA
ATGACAGACAAGAAAGACGGATACTCATTTCTCTATCCATTTGGGTGGCA
GGAAGTAGTCATTGAAGGTCAAGACAAGGTATTCAAAGATGTTATTGAGC
CATTAGAAAGCGTCAGTGTGAATTTGATAGCAACCAGCAAACAGGACATT
CGAGACTTTGGGTCCCCACAAGAGGTAGCTGAAACTCTAATCAAGAAAGT
TTTGGCTCCTGCAACACAGAAAACAAAGCTAATTGGGGCTGCAGAGCATG
ATGTAGACGGAAAAGCTTATTATACATTTGAGTTTGTTGCCCAGGCTCCA
AACTTCACTCGACATGCTCTTAGTGCAGTTTGTATTGGAAATGGTAAATT
CTACACTTTGACAACCGGAGCCAATGAGAGAAGGTGGGACAAGATGAAAG
ACAGATTGTTCACTGTCATAGACTCCTTTAGGATATTCAATGTTTGA
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protein sequence of Tc10v2_p004330.1

>Tc10v2_p004330.1 ID=Tc10v2_p004330.1|Name=Tc10v2_p004330.1|organism=Theobroma cacao|type=polypeptide|length=249bp
MAALQNSVPSLHHTLFINFFPQKGLRKHHHGAFLCCKRGVSVHVRAEQSS
SAADSSSSSHFQDSCGRRQMIAAGITGPLVSIVDQTPIAFAAETKKGFLS
MTDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLESVSVNLIATSKQDI
RDFGSPQEVAETLIKKVLAPATQKTKLIGAAEHDVDGKAYYTFEFVAQAP
NFTRHALSAVCIGNGKFYTLTTGANERRWDKMKDRLFTVIDSFRIFNV*
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