Tc10v2_t003400.1

Overview
NameTc10v2_t003400.1
Unique NameTc10v2_t003400.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length765
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttriosephosphate isomerase, cytosolic
NoteTriosephosphate isomerase, cytosolic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586084
GenbankXM_018129666.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g003400Tc10v2_g003400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p003400.1Tc10v2_p003400.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto492322auto492322Theobroma cacaoexon
exon-auto492323auto492323Theobroma cacaoexon
exon-auto492324auto492324Theobroma cacaoexon
exon-auto492325auto492325Theobroma cacaoexon
exon-auto492326auto492326Theobroma cacaoexon
exon-auto492327auto492327Theobroma cacaoexon
exon-auto492328auto492328Theobroma cacaoexon
exon-auto492329auto492329Theobroma cacaoexon
exon-auto492330auto492330Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto492331auto492331Theobroma cacaoCDS
CDS-auto492332auto492332Theobroma cacaoCDS
CDS-auto492333auto492333Theobroma cacaoCDS
CDS-auto492334auto492334Theobroma cacaoCDS
CDS-auto492335auto492335Theobroma cacaoCDS
CDS-auto492336auto492336Theobroma cacaoCDS
CDS-auto492337auto492337Theobroma cacaoCDS
CDS-auto492338auto492338Theobroma cacaoCDS
CDS-auto492339auto492339Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t003400.1 ID=Tc10v2_t003400.1|Name=Tc10v2_t003400.1|organism=Theobroma cacao|type=mRNA|length=765bp
ATGGGAAGAAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACGAC
TGAACAAGTGAAGAAGATAGTAAGCACTTTGAATGGAGGAAAGGTGCCTT
CTCAGGATGTTGTTGAGGTTGTCATTAGCCCTCCGTTTGTGTTCCTTCCT
TTGCTAAAAGAGGCACTGAGGCCTGACTTTCATGTTGCTGCTCAAAATTG
TTGGGTCAAGAAAGGAGGTGCTTTTACCGGTGAGGTTAGTGCGGAGATGC
TTGTCAATTTGAGCATTCCTTGGGTCATTATTGGTCACTCTGAGAGGAGA
CTTATTTTGAAGGAGTCAAATGAGTTTGTTGGGGATAAGGTTGCTTATGC
ACTTTGTCAAGGTTTGAAGGTGATAGCTTGTATTGGGGAGACACTTGAGC
AACGTGAAGCAGGATCTACTGTGGAGGTTGTTGCTGCACAAACCAAAGCA
ATTGCAGCAAAAGTATCAAACTGGGCAGATGTCGTTTTGGCCTATGAGCC
TGTGTGGGCTATTGGAACTGGGAAGGTTGCTACTCCAGCTCAAGCTCAGG
AAGTACATTCTGAGTTGAGGAAATGGCTTCAAGCAAACGTCAGTCCAGAA
GTTGCTGCATCAACCCGGATTATTTATGGAGGATCCGTCACTGCTGCAAA
CTGCAAGGAACTAGCAGCTCAGCCTGATGTTGATGGTTTCTTGGTTGGTG
GAGCTTCATTGAAGCCGGAGTTCATTGATATTATCAAGTCTGCTGAGGTC
AAGAAGAATGCCTAA
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protein sequence of Tc10v2_p003400.1

>Tc10v2_p003400.1 ID=Tc10v2_p003400.1|Name=Tc10v2_p003400.1|organism=Theobroma cacao|type=polypeptide|length=255bp
MGRKFFVGGNWKCNGTTEQVKKIVSTLNGGKVPSQDVVEVVISPPFVFLP
LLKEALRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVIIGHSERR
LILKESNEFVGDKVAYALCQGLKVIACIGETLEQREAGSTVEVVAAQTKA
IAAKVSNWADVVLAYEPVWAIGTGKVATPAQAQEVHSELRKWLQANVSPE
VAASTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAEV
KKNA*
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