Tc10v2_t002870.1

Overview
NameTc10v2_t002870.1
Unique NameTc10v2_t002870.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2154
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productdelta-1-pyrroline-5-carboxylate synthase
NoteDelta-1-pyrroline-5-carboxylate synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586020
GenbankXM_007009137.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g002870Tc10v2_g002870Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p002870.1Tc10v2_p002870.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto491190auto491190Theobroma cacaoexon
exon-auto491191auto491191Theobroma cacaoexon
exon-auto491192auto491192Theobroma cacaoexon
exon-auto491193auto491193Theobroma cacaoexon
exon-auto491194auto491194Theobroma cacaoexon
exon-auto491195auto491195Theobroma cacaoexon
exon-auto491196auto491196Theobroma cacaoexon
exon-auto491197auto491197Theobroma cacaoexon
exon-auto491198auto491198Theobroma cacaoexon
exon-auto491199auto491199Theobroma cacaoexon
exon-auto491200auto491200Theobroma cacaoexon
exon-auto491201auto491201Theobroma cacaoexon
exon-auto491202auto491202Theobroma cacaoexon
exon-auto491203auto491203Theobroma cacaoexon
exon-auto491204auto491204Theobroma cacaoexon
exon-auto491205auto491205Theobroma cacaoexon
exon-auto491206auto491206Theobroma cacaoexon
exon-auto491207auto491207Theobroma cacaoexon
exon-auto491208auto491208Theobroma cacaoexon
exon-auto491209auto491209Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto491210auto491210Theobroma cacaoCDS
CDS-auto491211auto491211Theobroma cacaoCDS
CDS-auto491212auto491212Theobroma cacaoCDS
CDS-auto491213auto491213Theobroma cacaoCDS
CDS-auto491214auto491214Theobroma cacaoCDS
CDS-auto491215auto491215Theobroma cacaoCDS
CDS-auto491216auto491216Theobroma cacaoCDS
CDS-auto491217auto491217Theobroma cacaoCDS
CDS-auto491218auto491218Theobroma cacaoCDS
CDS-auto491219auto491219Theobroma cacaoCDS
CDS-auto491220auto491220Theobroma cacaoCDS
CDS-auto491221auto491221Theobroma cacaoCDS
CDS-auto491222auto491222Theobroma cacaoCDS
CDS-auto491223auto491223Theobroma cacaoCDS
CDS-auto491224auto491224Theobroma cacaoCDS
CDS-auto491225auto491225Theobroma cacaoCDS
CDS-auto491226auto491226Theobroma cacaoCDS
CDS-auto491227auto491227Theobroma cacaoCDS
CDS-auto491228auto491228Theobroma cacaoCDS
CDS-auto491229auto491229Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t002870.1 ID=Tc10v2_t002870.1|Name=Tc10v2_t002870.1|organism=Theobroma cacao|type=mRNA|length=2154bp
ATGGGAGATATGGATCCTTCTCGAGGTTTTGTTAAAGACGTTAAGCGTCT
GGTCATCAAGGTTGGGACTGCTGTTGTTACTCGAACTGATGGACGATTAG
CACTTGGAAGATTAGGAGCACTATGTGAGCAGATTAAAGAATTGAACTCT
CAAGGATATGAGGTTATTTTGGTGTCATCAGGTGCTGTCGGGCTTGGTCG
CCAAAGGCTTAGATACAGGAGATTAGTTAACAGCAGCTTTGCTGATCTTC
AGAAACCACAAGTAGAACTTGATGGAAAGGCATGTGCAGCTGTTGGACAA
AATAGTCTTATGGCCCTGTATGATACATTGTTTAGTGAGCTGGATGTTTC
ATCAGCTCAACTTCTTGTAACAGATAGCGACTTTAGAGATGGAGATTTTA
GGAAGCAACTAAGTGAAACAGTGAAGTCTTTATTATCGCTGAGAGTTATT
CCAATATTTAATGAAAATGATGCAGTCAGTACCAGGAAAGCTCCATATGA
GGATTCTTCTGGTATATTTTGGGATAATGACAGTTTAGCAGCTCTACTGG
CATTGGAACTAAAAGCTGATCTTCTTGTTTTGTTGAGTGATGTGGAGGGT
CTTTACAGTGGCCCTCCAAGTGATCCGAAATCAAAGCTAATCCACACATA
TGTTAAGGAAAAGCATCAGGGTGAGATTACCTTTGGAGACAAGTCGAGGG
TGGGTAGAGGGGGTATGACTGCAAAAGTAAAAGCTGCTGTCAATGCAGCT
AATGCTGGCATTCCTGTTGTTATTACCAGTGGGTATGCAGCTGAGAACAT
ACTAAAAGTCCTCCAAGGAAAACGGATTGGTACACTCTTTCATCAAAATG
CACATTTGTGGGAACCAATTAAAGAAGTTGGGGCCCGTGAAATGGCAGTT
GCAGCAAGAGAAAGTTCCAGAAAACTTCAGGCATTGTCTTCACAAGAACG
GAAAAAGATTTTACTAGACATAGCTGATGCTCTTGAAGCAAATGAAAAGG
TGATCACTATTGAGAATGAAGCTGATGTTGCTGCTGCACAACAGGCTGGA
TATGAGAAATCCTTGATATCCCGGCTAGCTCTGAAGCCTGGGAAGATTTC
AAGCCTTGCAAAGTCTATTCGTGTGCTTGCTAACATGGAAGACGCAATTG
GCCGTGTTTTGAAGAAAACCCAGCTTGCAGATGGACTCATTTTGGAGAAA
ACATCAAGTCCTTTGGGTGTTCTTTTGATTGTTTTTGAATCTCGACCTGA
TGCACTTGTACAGATAGCCTCGTTAGCTATCCGAAGTGGAAATGGGCTTC
TCTTGAAAGGGGGAAAGGAGGCCAAGCGATCAAATGCTATTTTGCATAAG
GTAATAACTGAAGCCATTCCAGACACTGTTGGTGGCAAAGTTATTGGACT
TGTGACTACAAGAGAGGAGATTCCTAATCTTTTGAAGCTTGATGATGTGA
TTGATCTTGTGATCCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAG
AGTTCAACCAAAATTCCAGTTCTTGGTCATGCAGATGGAATTTGCCATGT
ATATGTTGATAAGTCTGCTGACATGGATATGGCAAAGAAGATTGTTTTGG
ATGCAAAAATAGATTATCCTGCTGCTTGTAATGCAATGGAAACTCTTCTT
GTACACAAGGATTTAGTGCAGACTGGTGCACTTAATGACCTAATTAATGA
TCTTCATATAGAAGGTGTTATTTTATATGGTGGGCCAAGGGCAAGCAACT
TGTTGAGTATCCCACAGGCACGTTCATTTCATCATGAATACAATTCAATG
GCCTGCACTGTTGAAATAGTCGATGATGTGGGTGCAGCCATCGATCATAT
CCATCATCATGGAAGTGCACACACAGATTGTATCATCACAGAGGACCAGG
AAATTGCAGAAATCTTCCTGCATCAAGTTGACAGTGCTGCTGTTTTCCAC
AATGCAAGCACAAGATTTTGTGATGGGGCTCGATTCGGGCTAGGAGCTGA
GGTTGGGATAAGTACAAGTAGGATTCATGCTCGGGGTCCTGTTGGAGTTG
AAGGGTTGTTAACAACAAGATGGATTCTCAAAGGAAGCGGACAGGTGGTG
GACGGTGATAAAGGGGTCACTTATGTTCACAAAGACGTACCTGTTGATTC
TTGA
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protein sequence of Tc10v2_p002870.1

>Tc10v2_p002870.1 ID=Tc10v2_p002870.1|Name=Tc10v2_p002870.1|organism=Theobroma cacao|type=polypeptide|length=718bp
MGDMDPSRGFVKDVKRLVIKVGTAVVTRTDGRLALGRLGALCEQIKELNS
QGYEVILVSSGAVGLGRQRLRYRRLVNSSFADLQKPQVELDGKACAAVGQ
NSLMALYDTLFSELDVSSAQLLVTDSDFRDGDFRKQLSETVKSLLSLRVI
PIFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEG
LYSGPPSDPKSKLIHTYVKEKHQGEITFGDKSRVGRGGMTAKVKAAVNAA
NAGIPVVITSGYAAENILKVLQGKRIGTLFHQNAHLWEPIKEVGAREMAV
AARESSRKLQALSSQERKKILLDIADALEANEKVITIENEADVAAAQQAG
YEKSLISRLALKPGKISSLAKSIRVLANMEDAIGRVLKKTQLADGLILEK
TSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK
VITEAIPDTVGGKVIGLVTTREEIPNLLKLDDVIDLVIPRGSNKLVSQIK
SSTKIPVLGHADGICHVYVDKSADMDMAKKIVLDAKIDYPAACNAMETLL
VHKDLVQTGALNDLINDLHIEGVILYGGPRASNLLSIPQARSFHHEYNSM
ACTVEIVDDVGAAIDHIHHHGSAHTDCIITEDQEIAEIFLHQVDSAAVFH
NASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVV
DGDKGVTYVHKDVPVDS*
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