Tc10v2_t001960.1

Overview
NameTc10v2_t001960.1
Unique NameTc10v2_t001960.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1425
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 71 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productauxin transporter-like protein 2, transcript variant X2
NoteAuxin transporter-like protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18585913
GenbankXM_007008986.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g001960Tc10v2_g001960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p001960.1Tc10v2_p001960.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto489916auto489916Theobroma cacaoexon
exon-auto489917auto489917Theobroma cacaoexon
exon-auto489918auto489918Theobroma cacaoexon
exon-auto489919auto489919Theobroma cacaoexon
exon-auto489920auto489920Theobroma cacaoexon
exon-auto489921auto489921Theobroma cacaoexon
exon-auto489922auto489922Theobroma cacaoexon
exon-auto489923auto489923Theobroma cacaoexon
exon-auto489924auto489924Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto489925auto489925Theobroma cacaoCDS
CDS-auto489926auto489926Theobroma cacaoCDS
CDS-auto489927auto489927Theobroma cacaoCDS
CDS-auto489928auto489928Theobroma cacaoCDS
CDS-auto489929auto489929Theobroma cacaoCDS
CDS-auto489930auto489930Theobroma cacaoCDS
CDS-auto489931auto489931Theobroma cacaoCDS
CDS-auto489932auto489932Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t001960.1 ID=Tc10v2_t001960.1|Name=Tc10v2_t001960.1|organism=Theobroma cacao|type=mRNA|length=1425bp
ATGTCAGGACAGAAACAGGCTGAGGAAGCAATTGTTCCAAGCCTTAATGA
GGCTTCTGAACATGAAGAGAAAGAGGAAGAGAAGGGAGATCATTCCATCT
TCAGTGTTAAGAGCCTTCTTTGGCATGGTGGTTCTGTTTATGATGCCTGG
TTTAGCTGTGCTTCAAATCAGGTGGCTCAAGTTCTGTTAACACTACCATA
TTCTTTCTCTCAAATGGGAATGCTTTCGGGGATTATTCTGCAGATTTTTT
ATGGCTTTCTTGGAAGCTGGACTGCTTATCTCATCAGTGTTCTGTATATT
GAGTACCGAAGCAGAAAGGAGAAAGAGAATGTCAGCTTCAAGAACCATGT
CATACAGTGGTTTGAAGTGCTAGATGGTCTCTTGGGACCTTACTGGAAAG
CTGTTGGATTGGCTTTTAACTGCACTTTTCTGCTCTTTGGATCTGTCATT
CAGCTTATAGCCTGTGCCAGCAACATATATTACATAAATGACAAGTTAGA
CAAGAGGACATGGACTTATATCTTTGGAGCTTGCTGTGCTACCACAGTCT
TCATCCCCTCATTTCACAACTATAGAATGTGGTCTTTTCTGGGGCTCGGC
ATGACCACCTACACTGCTTGGTATCTGACCATAGCAGCCCTTGTCCATGG
CCAGGTGGAGGGTGTAACTCACCAAGGTCCAACTAAGTTGGTTTTGTACT
TCACTGGCGCCACCAATATCCTCTATACTTTCGGCGGACATGCTGTCACT
GTTGAAATTATGCATGCGATGTGGAAGCCTCAGAAATTCAAGTGCATATA
CCTATTGGCCACTCTCTATGTTTTCACGCTAACCATCCCATCTGCTGCTG
CTGTCTATTGGGCTTTCGGTGATCAACTCCTTAACCATTCCAATGCCTTT
TCACTCCTTCCACACTCTGGATGGCGTGATGCAGCAGTTGTGCTAATGTT
AATTCACCAGTTTATTACATTTGGGTTTGCTTGTACGCCATTGTACTTTG
TGTGGGAGAAAGTGGTGGGGATGCATGATACAAAAAGCATATGTTTGAGG
GCAGTATGCCGCTTACCTGTGGTGATACCTATCTGGTTCTTGGCTATCAT
ATTTCCTTTCTTTGGTCCCATTAACTCGGCTGTAGGATCTCTTCTGGTCA
GCTTCACTGTCTACATCATCCCTGCCTTGGCTCATATGCTCACTTATAAA
TCAGCCTCCGCCCGACAGAATGCAGCTGAGAAGCCTCCTTTCTTCCTCCC
AAGCTGGACAGCAGTGTATGCAGTGAACACATTCATTGTGGCATGGGTCT
TCGTAGTTGGCTTTGGATTGGGAGGTTGGGCTAGTATGACAAACTTCATC
AAGCAAGTCGATACATTCGGGCTCTTTGCCAAGTGCTACCAATGCCCACC
CTCACCATCATCAAAGCATCACTGA
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protein sequence of Tc10v2_p001960.1

>Tc10v2_p001960.1 ID=Tc10v2_p001960.1|Name=Tc10v2_p001960.1|organism=Theobroma cacao|type=polypeptide|length=475bp
MSGQKQAEEAIVPSLNEASEHEEKEEEKGDHSIFSVKSLLWHGGSVYDAW
FSCASNQVAQVLLTLPYSFSQMGMLSGIILQIFYGFLGSWTAYLISVLYI
EYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVI
QLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLG
MTTYTAWYLTIAALVHGQVEGVTHQGPTKLVLYFTGATNILYTFGGHAVT
VEIMHAMWKPQKFKCIYLLATLYVFTLTIPSAAAVYWAFGDQLLNHSNAF
SLLPHSGWRDAAVVLMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLR
AVCRLPVVIPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMLTYK
SASARQNAAEKPPFFLPSWTAVYAVNTFIVAWVFVVGFGLGGWASMTNFI
KQVDTFGLFAKCYQCPPSPSSKHH*
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