Tc10v2_t000960.4

Overview
NameTc10v2_t000960.4
Unique NameTc10v2_t000960.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1482
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productmultiple inositol polyphosphate phosphatase 1, transcript variant X2
NoteHistidine acid phosphatase family protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18585803
GenbankXM_018128976.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g000960Tc10v2_g000960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p000960.4Tc10v2_p000960.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto488170auto488170Theobroma cacaoexon
exon-auto488171auto488171Theobroma cacaoexon
exon-auto488172auto488172Theobroma cacaoexon
exon-auto488173auto488173Theobroma cacaoexon
exon-auto488174auto488174Theobroma cacaoexon
exon-auto488175auto488175Theobroma cacaoexon
exon-auto488176auto488176Theobroma cacaoexon
exon-auto488177auto488177Theobroma cacaoexon
exon-auto488178auto488178Theobroma cacaoexon
exon-auto488179auto488179Theobroma cacaoexon
exon-auto488180auto488180Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto488181auto488181Theobroma cacaoCDS
CDS-auto488182auto488182Theobroma cacaoCDS
CDS-auto488183auto488183Theobroma cacaoCDS
CDS-auto488184auto488184Theobroma cacaoCDS
CDS-auto488185auto488185Theobroma cacaoCDS
CDS-auto488186auto488186Theobroma cacaoCDS
CDS-auto488187auto488187Theobroma cacaoCDS
CDS-auto488188auto488188Theobroma cacaoCDS
CDS-auto488189auto488189Theobroma cacaoCDS
CDS-auto488190auto488190Theobroma cacaoCDS
CDS-auto488191auto488191Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t000960.4 ID=Tc10v2_t000960.4|Name=Tc10v2_t000960.4|organism=Theobroma cacao|type=mRNA|length=1482bp
ATGGCTATGGCTGCTATTTTGTTGCTCATCTTAGCGTTGTTTTCAAATTC
AAAAGCTGATCAAGATTTCGATGTGCGTCAACACCTATCTACTGTAACAA
GATATAGTGCAGTGAAAGATATTGTCGACGATTCCTTTCTACCTTCTGAT
ATTCCTGATGGATGTACTCCTATCCACTTGAATCTCGTGGCAAGACATGG
AACTCGTACTCCTACTAAGAAGCGGATGAGAGAGTTGGAAAAGTTGGCTG
CTCATGTACAAGAACTTCTAAAAGACGCCAAAGAAAAGAATTTGTCCCTG
CAGAAAGTTCCTGCCTGGTTGCAGAAATGGGAATCTCCTTGGAAAGGAAA
ATTGACGGGTGGAGAATTGGATATCAAAGGAGAAGAGGAAATGTATCAGC
TTGGAATCAGGGTTAGGGAAAGATTTCCTGATATATTTAATGAGGAATAC
CACCCCGATGTGTATCCCATAAAGACTACACAGGTTCCTCGGGCTTCTGC
TAGTGCTGTTGCTTTTGGCATGGGGCTATTTAGTGGCAAAGGAAGTCTAG
GACCAGGGCGTCATCGAGCTTTTGCTGTTACAAGTGAAAGTCGTGCAAGT
GATTTAGTTCTGAGGTTTTTTGATTGTTGTCAAACCTACAAGGACTTTAG
GAAAAACCATGGGCCTGCTGTTGACAACCTGAAAGAACCAATCCTCACCG
AAATTACCTCTGCATTAGCAAGACGATATGAGTTCAATTTCACAAGACAG
GATATATCTTCTCTCTGGTTTCTGTGTAAACAGGAAACATCCTTGTTGGA
TATAACCGATCAAGCTTGCAGTCTTTTCAGTCCCACTGAGGTTGCTTTGC
TGGAGTGGACGGATGATTTGGAGGTGTTTATATTGAAGGGCTACGGTAAA
TCCTTAAATTATCGAATGGGAGTGCCTTTACTTAAAGATGTTGTTCAATC
CATGGAGGAAGCTATCAAGGCTAAAGAAGATAACCAAGCTCCTGGCAGTT
ACGAGAAGGCAAGACTGCGGTTTGCACATGCAGAAACTGTGGTTCCTTTT
TCATGCTTGCTTGGGCTTTTCCTTGAAGGATCTGATTTCCAACGAATACA
AAAGGAGGAGCCTTTGGGTCTCCCTCCAAAGCCTCCCCAGAATAGAAATT
GGAGAGGCAGCACCGTGGCGCCTTTTGCTGGGAATAATATGCTGGTTTTA
TACAGTTGTCCTGCTAATTCTTCAAGCAAATACTTTGTGCAAGTCCTACA
CAATGAGCATCCCACCCGAATGCCAGGTTGTGGTGGTACTGATTTCTGTC
CATTTGAAGTTTTCGAGGAGAGAATTGTACGGCCTCATTTAAAGCATGAT
TACAATACCCTTTGCAATGTGAATCTTGATCAGCCTAAGCAGAAGCCTGA
AACCAGTAAGTTATTGCAACTGTTTCGTTGGTTCTTTGGGTTGGGGAACG
ATGATATTCCGTCCCACAGAGTTGAATTGTAG
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protein sequence of Tc10v2_p000960.4

>Tc10v2_p000960.4 ID=Tc10v2_p000960.4|Name=Tc10v2_p000960.4|organism=Theobroma cacao|type=polypeptide|length=494bp
MAMAAILLLILALFSNSKADQDFDVRQHLSTVTRYSAVKDIVDDSFLPSD
IPDGCTPIHLNLVARHGTRTPTKKRMRELEKLAAHVQELLKDAKEKNLSL
QKVPAWLQKWESPWKGKLTGGELDIKGEEEMYQLGIRVRERFPDIFNEEY
HPDVYPIKTTQVPRASASAVAFGMGLFSGKGSLGPGRHRAFAVTSESRAS
DLVLRFFDCCQTYKDFRKNHGPAVDNLKEPILTEITSALARRYEFNFTRQ
DISSLWFLCKQETSLLDITDQACSLFSPTEVALLEWTDDLEVFILKGYGK
SLNYRMGVPLLKDVVQSMEEAIKAKEDNQAPGSYEKARLRFAHAETVVPF
SCLLGLFLEGSDFQRIQKEEPLGLPPKPPQNRNWRGSTVAPFAGNNMLVL
YSCPANSSSKYFVQVLHNEHPTRMPGCGGTDFCPFEVFEERIVRPHLKHD
YNTLCNVNLDQPKQKPETSKLLQLFRWFFGLGNDDIPSHRVEL*
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