Tc10v2_t000530.1

Overview
NameTc10v2_t000530.1
Unique NameTc10v2_t000530.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length909
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
ProductU3 small nucleolar ribonucleoprotein protein IMP4
NoteRibosomal RNA processing Brix domain protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18585761
GenbankXM_007008752.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g000530Tc10v2_g000530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p000530.1Tc10v2_p000530.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto487426auto487426Theobroma cacaoexon
exon-auto487427auto487427Theobroma cacaoexon
exon-auto487428auto487428Theobroma cacaoexon
exon-auto487429auto487429Theobroma cacaoexon
exon-auto487430auto487430Theobroma cacaoexon
exon-auto487431auto487431Theobroma cacaoexon
exon-auto487432auto487432Theobroma cacaoexon
exon-auto487433auto487433Theobroma cacaoexon
exon-auto487434auto487434Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto487435auto487435Theobroma cacaoCDS
CDS-auto487436auto487436Theobroma cacaoCDS
CDS-auto487437auto487437Theobroma cacaoCDS
CDS-auto487438auto487438Theobroma cacaoCDS
CDS-auto487439auto487439Theobroma cacaoCDS
CDS-auto487440auto487440Theobroma cacaoCDS
CDS-auto487441auto487441Theobroma cacaoCDS
CDS-auto487442auto487442Theobroma cacaoCDS
CDS-auto487443auto487443Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t000530.1 ID=Tc10v2_t000530.1|Name=Tc10v2_t000530.1|organism=Theobroma cacao|type=mRNA|length=909bp
ATGTTGAGAAGAAACATAAGATTGAGAAGAGAGTATTTGTACAGGAAGAG
CTTGGAAGGCAAAGAGCGGTTGCTTTATGAGAAGAAACGGAAGATCAGAG
AAGCTCTTGAGGAGGGAAAACCAATTCCAACTGAGCTTCGAAATGAGGAG
GCCACGCTTCGCCAAGAAATTGACCTTGAAGATGACTACACTGCCATTCC
CAAAAGTCATATTGATGATGAGTATGCAAATGCAACGGAACGAGATCCTA
AGATTTTGCTGACGACGTCTCGGGATCCAAGTGCTCCTCTTGTACAGTTT
GTTAAGGAATTGAAGTTTGTCTTTCCTAATGCAGAGCGAATGAATCGTGG
TAACCAGGTTATATCTGAAATTATTGAAAGTTGCAGGGCACACGATTTTA
CAGATGTTATTTTGGTTCATGAACATCGTGGTGTGCCAGATGGTTTGATT
ATAAGTCATCTTCCTTTCGGTCCCACAGCATACTTTGGATTACTCAATGT
GGTTACAAGACATGACATTAAGGACAAGAAAGCCATTGGAAAAATGCCTG
AGGCCTATCCACATTTGATTCTTGACAATTTTGGAACCAAGCTGGGTGAG
AGGACAGCAAATATTCTAAAGCATCTGTTCCCTGTCCCAAAGCCTGATAC
AAAACGTATTGTGACTTTTGCTAATCAGTCTGACTATATTTCATTCAGGC
ATCACATATATGAGAAGCATGGAGGTCCTAAATCAGTTGAGCTGAAGGAG
ATTGGTCCTAGGTTCGAATTGCGGCTTTATCAGATAAAATTAGGAACAAT
GGACCAGAGTGAGGCTCAGATCGAATGGGTTATTAGGCCTTACATGAACA
CAACCAAGAAACGCAACTTCATTGGAGTTGACCAAAAGGATGATAAAAGA
AAACATTGA
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protein sequence of Tc10v2_p000530.1

>Tc10v2_p000530.1 ID=Tc10v2_p000530.1|Name=Tc10v2_p000530.1|organism=Theobroma cacao|type=polypeptide|length=303bp
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEE
ATLRQEIDLEDDYTAIPKSHIDDEYANATERDPKILLTTSRDPSAPLVQF
VKELKFVFPNAERMNRGNQVISEIIESCRAHDFTDVILVHEHRGVPDGLI
ISHLPFGPTAYFGLLNVVTRHDIKDKKAIGKMPEAYPHLILDNFGTKLGE
RTANILKHLFPVPKPDTKRIVTFANQSDYISFRHHIYEKHGGPKSVELKE
IGPRFELRLYQIKLGTMDQSEAQIEWVIRPYMNTTKKRNFIGVDQKDDKR
KH*
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