Tc10v2_t000030.4

Overview
NameTc10v2_t000030.4
Unique NameTc10v2_t000030.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1854
Properties
Property NameValue
NoteProbable serine/threonine-protein kinase At4g35230
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productprobable serine/threonine-protein kinase At5g41260, transcript variant X6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18585703
GenbankXM_018129528.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g000030Tc10v2_g000030Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p000030.4Tc10v2_p000030.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto485938auto485938Theobroma cacaoexon
exon-auto485939auto485939Theobroma cacaoexon
exon-auto485940auto485940Theobroma cacaoexon
exon-auto485941auto485941Theobroma cacaoexon
exon-auto485942auto485942Theobroma cacaoexon
exon-auto485943auto485943Theobroma cacaoexon
exon-auto485944auto485944Theobroma cacaoexon
exon-auto485945auto485945Theobroma cacaoexon
exon-auto485946auto485946Theobroma cacaoexon
exon-auto485947auto485947Theobroma cacaoexon
exon-auto485948auto485948Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto485949auto485949Theobroma cacaoCDS
CDS-auto485950auto485950Theobroma cacaoCDS
CDS-auto485951auto485951Theobroma cacaoCDS
CDS-auto485952auto485952Theobroma cacaoCDS
CDS-auto485953auto485953Theobroma cacaoCDS
CDS-auto485954auto485954Theobroma cacaoCDS
CDS-auto485955auto485955Theobroma cacaoCDS
CDS-auto485956auto485956Theobroma cacaoCDS
CDS-auto485957auto485957Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t000030.4 ID=Tc10v2_t000030.4|Name=Tc10v2_t000030.4|organism=Theobroma cacao|type=mRNA|length=1854bp
ATGCTTTCCACTAATTTATACTTTTATTATTACTATTATTATTACGTAAT
GTTAACAAAAATCCTTCCTTGGAGTTATTATTTATACAAAAAACCCTATT
TTATATTATCACATCAAAAACTCACACTTGGAGTTAGTATTATTCTTTCA
ATTCACAACAAACAAAAAGGGCAAAAGTATTCACTTGGAACCCCCCATTC
AACTCCTCATTTTAGTCAACTTTCTTTCTTCCCACTCCTCAGTCCTGCCT
CCCCAAACTCTCAAGTCTTGTTCCAAGTTCCTACTATACTATACCACACT
TACTCTATACTCTACACTGGAGTCCTCCTGCTCCTGCTGCTCTTGCTTAT
ACTATTATATGTGAACAAAGGCAGACCAACAGTGATGGGCTGCTTTCAGT
CCAAAACCACCCATCTTCCATCCCCTGATCAAGATCCTCCTCCTCAAACC
AAGCCAGATCTAGATGGGGACGGGGAGCAGTCGTCATTGCCCGCATTCAA
GGAGTTCGGTCTGGTGGAGCTGCGGGCGGCGACCAACGGATTCAGCAGTG
AGCTGATAGTTTCAGAGAGCGGAGAGAAGGCTCCGAATGTGGTGTACAGA
GGGAAGCTGAAGAACAATCGAGTGGTGGCCATTAAGCGATTCTCGAGGCA
GTCATGGCCTGATCCTCACCAGTTCGTTAACGAAGCTGCTGGGGTTGGAA
AAGTCCGCCACAAAAGATTGGTCAATTTGATTGGCTGTTGCGCCGAGGGA
GACGAGCGCTTGTTGGTCGCTGAGTATATGCCTAATGATACCCTCTCTAA
GCATCTTTTCCACTGGGAGAAACAGCCTTTGCCATGGGAAATGCGCCTCA
GAGTTGCGTACCATATTGCACAAGCCCTTGATCACTGCAACGCTGAAAAC
CGTAAAATTTATCACGATTTAAATGCTTACAGAGTTCTTTTCGATGAGGA
TGGTGATCCTCGATTATCTAGTTTTGGATTGATGAAAAATAGCCGAGATG
GAAAAAGTTACAGTACTAATTTGGCTTATACTCCTCCGGAGTTTTTGAGG
ACAGGCAGGGTCATCCCTGAGAGTGTTATTTACAGTTATGGAACTGTTCT
CTTGGATCTCTTAAGTGGAAAGCATATTCCTCCCAGCCATGCATTGGACT
TGATAAGAGGAAAGAATTTATTGTTGTTAATGGATTCTTCTCTGGAAGGT
CAATATGCTAATGAAGATGCCAGCGAATTGGTTGAATTGGCTTCAAAATG
TCTTCAGTACGAGGCTAGAGATCGACCTGATATTGAATTCCTCCTTTCAG
CAGTGGTACCTCTTCAAAAGCAGAAAGAGGTTGCATCACATGTTCTAATG
GGTCTATCAAGAACCCCATCACTGTTGCCAACTATGCTTTCTGCACTTGG
AAAGGCATGTGCCAGGATGGATCTTACTGCAGTGCATGATATCTTGCTTA
AAACTGGTTATAGAGATGAAGAAGGTGCAGAAAATGAGCTGTCATTCCAA
GAGTGGACGCAACAGGTTCAAGATATGCTGAATACAAAGAAATTTGGGGA
TATTGCATTTAGAGACAAAGATTTTAAAAATGCTATTGATTACTACTCGA
AGTTGGTATCGATGATGTCTGTTCCTTCTGGTACTGTATTTGTGAGAAGA
GCCCTCTCATTCTTGATGATTGGTCAACCAGAATTTGCCTTGAGAGATGC
CATGCAGGCTCAGGTGTGCTTGCCCGAATGGCCCACTGCCTTCTACATGC
AAGCTCTTGCCCTCTCCAAGCTTGGAATGGAAACTGATGCGCAAGACATG
CTTAATGATGGAGCCTCATTTGAGGCAAAGAAGCAGAATGGCTGGCGTGT
CTAA
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protein sequence of Tc10v2_p000030.4

>Tc10v2_p000030.4 ID=Tc10v2_p000030.4|Name=Tc10v2_p000030.4|organism=Theobroma cacao|type=polypeptide|length=618bp
MLSTNLYFYYYYYYYVMLTKILPWSYYLYKKPYFILSHQKLTLGVSIILS
IHNKQKGQKYSLGTPHSTPHFSQLSFFPLLSPASPNSQVLFQVPTILYHT
YSILYTGVLLLLLLLLILLYVNKGRPTVMGCFQSKTTHLPSPDQDPPPQT
KPDLDGDGEQSSLPAFKEFGLVELRAATNGFSSELIVSESGEKAPNVVYR
GKLKNNRVVAIKRFSRQSWPDPHQFVNEAAGVGKVRHKRLVNLIGCCAEG
DERLLVAEYMPNDTLSKHLFHWEKQPLPWEMRLRVAYHIAQALDHCNAEN
RKIYHDLNAYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLR
TGRVIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNLLLLMDSSLEG
QYANEDASELVELASKCLQYEARDRPDIEFLLSAVVPLQKQKEVASHVLM
GLSRTPSLLPTMLSALGKACARMDLTAVHDILLKTGYRDEEGAENELSFQ
EWTQQVQDMLNTKKFGDIAFRDKDFKNAIDYYSKLVSMMSVPSGTVFVRR
ALSFLMIGQPEFALRDAMQAQVCLPEWPTAFYMQALALSKLGMETDAQDM
LNDGASFEAKKQNGWRV*
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