Tc09v2_t029680.2

Overview
NameTc09v2_t029680.2
Unique NameTc09v2_t029680.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length723
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprobable phytol kinase 3, chloroplastic, transcript variant X2
NoteProbable phytol kinase 3, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590992
GenbankXM_018128426.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g029680Tc09v2_g029680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p029680.2Tc09v2_p029680.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto483589auto483589Theobroma cacaoexon
exon-auto483590auto483590Theobroma cacaoexon
exon-auto483591auto483591Theobroma cacaoexon
exon-auto483592auto483592Theobroma cacaoexon
exon-auto483593auto483593Theobroma cacaoexon
exon-auto483594auto483594Theobroma cacaoexon
exon-auto483595auto483595Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto483596auto483596Theobroma cacaoCDS
CDS-auto483597auto483597Theobroma cacaoCDS
CDS-auto483598auto483598Theobroma cacaoCDS
CDS-auto483599auto483599Theobroma cacaoCDS
CDS-auto483600auto483600Theobroma cacaoCDS
CDS-auto483601auto483601Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t029680.2 ID=Tc09v2_t029680.2|Name=Tc09v2_t029680.2|organism=Theobroma cacao|type=mRNA|length=723bp
ATGCTAGATAAGAATCCGGTGGTGTCTGACTTGTTAGCCGCCGCGGTTTG
CTGCGGCGTTATTTTTGCGTTTCTTTTACTCTGGCAAGAAACTGCCAAAA
GAGGCCTTGATCAGAAACTGAATAGGAAGCTTGTGCATATAAGTATCGGG
CTTGTTTTCATGCTTTGCTGGCCATTATTCAGTTCTGGGTATCGGGGAGC
AATTTTAGCAGCTATTACTCCTGGTGTCAATATTATACGGATGCTTCTTA
TAGGTTCTGGATTATGGAAAGATGAAGCCACTGTGAAGTCAATGAGCAGA
TATGGAGACTACAGGGAACTACTTAAAGGACCACTATATTATGCTACAAC
TATTACTTTGGCTTGTGCGCTCTACTGGAGGACTTCACCTATTGCAGTGG
CTGCAATATGTAACCTTTGTGCTGGAGATGGTATTGCGGATGTCGTGGGA
AGGCGATTTGGTAGACAGAAACTCCCTTACAATAGTAACAAGTCTATAGC
TGGTAGTGTTGCCATGGCAACAGCTGGTTTTTTGGCCTCTGTTGGGTTTA
TGTACTATTTTGCCTACTTTGGATATATTCAAGAAAGCTGGGAGATTGTT
TTGGGTTTCTTGGTTGTGTCTCTTGCCTCAGCCTTGGTGGAGTCACTCCC
GATTAGTACCGAGCTTGATGACAACCTCACAGTTACTTTAACTTCAATAT
TGGTCGGCAGTCTTGTCTTTTGA
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protein sequence of Tc09v2_p029680.2

>Tc09v2_p029680.2 ID=Tc09v2_p029680.2|Name=Tc09v2_p029680.2|organism=Theobroma cacao|type=polypeptide|length=241bp
MLDKNPVVSDLLAAAVCCGVIFAFLLLWQETAKRGLDQKLNRKLVHISIG
LVFMLCWPLFSSGYRGAILAAITPGVNIIRMLLIGSGLWKDEATVKSMSR
YGDYRELLKGPLYYATTITLACALYWRTSPIAVAAICNLCAGDGIADVVG
RRFGRQKLPYNSNKSIAGSVAMATAGFLASVGFMYYFAYFGYIQESWEIV
LGFLVVSLASALVESLPISTELDDNLTVTLTSILVGSLVF*
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