Tc09v2_t029500.2

Overview
NameTc09v2_t029500.2
Unique NameTc09v2_t029500.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length891
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductE3 ubiquitin-protein ligase MIEL1, transcript variant X2
NoteE3 ubiquitin-protein ligase MIEL1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590969
GenbankXM_007016828.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g029500Tc09v2_g029500Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p029500.2Tc09v2_p029500.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto483212auto483212Theobroma cacaoexon
exon-auto483213auto483213Theobroma cacaoexon
exon-auto483214auto483214Theobroma cacaoexon
exon-auto483215auto483215Theobroma cacaoexon
exon-auto483216auto483216Theobroma cacaoexon
exon-auto483217auto483217Theobroma cacaoexon
exon-auto483218auto483218Theobroma cacaoexon
exon-auto483219auto483219Theobroma cacaoexon
exon-auto483220auto483220Theobroma cacaoexon
exon-auto483221auto483221Theobroma cacaoexon
exon-auto483222auto483222Theobroma cacaoexon
exon-auto483223auto483223Theobroma cacaoexon
exon-auto483224auto483224Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto483225auto483225Theobroma cacaoCDS
CDS-auto483226auto483226Theobroma cacaoCDS
CDS-auto483227auto483227Theobroma cacaoCDS
CDS-auto483228auto483228Theobroma cacaoCDS
CDS-auto483229auto483229Theobroma cacaoCDS
CDS-auto483230auto483230Theobroma cacaoCDS
CDS-auto483231auto483231Theobroma cacaoCDS
CDS-auto483232auto483232Theobroma cacaoCDS
CDS-auto483233auto483233Theobroma cacaoCDS
CDS-auto483234auto483234Theobroma cacaoCDS
CDS-auto483235auto483235Theobroma cacaoCDS
CDS-auto483236auto483236Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t029500.2 ID=Tc09v2_t029500.2|Name=Tc09v2_t029500.2|organism=Theobroma cacao|type=mRNA|length=891bp
ATGGAAGGTGGACGTGAGACAAAGTTATCTACTGATGAATTGGAATCTGT
TGAATTTGGAAATCAAAATGCTGCTTTGATGGAGATTGGATTAGGGAATC
ATGGGTGCTTGCATTACAGAAGGAGATGTAAGATTAGAGCACCATGTTGC
AATGAGATCTTTGATTGCAGGCATTGCCATAATGAAGCTAAGAATTCCCT
GGAATGTAATCCTCTGGAGCAACATGAAATTCCACGCCATGAAGTTGAAA
CGGTCATTTGCTCCCTATGCGACACAGAACAAGATGTTCAACAATATTGC
ATCAATTGCGGAGTCTGTATGGGGAAGTACTTCTGTGCTAAATGCAAATT
CTTTGATGATAATGTTTCTAAAAACCAATACCACTGCAATGAGTGTGGTA
TATGCAGAACTGGAGGTGAGGAGAACTTCTTTCATTGCAACAAATGTGGA
TGTTGCTATTCCAAATCAATGAGCGATGCACATCGTTGTGTGGAGAGAGC
AATGCACCACAACTGCCCTGTTTGCTTTGAGTTTCTTTTTGATACAATGA
AGGATATAACTGTCTTACCTTGTGGACACACAATGCATTTGGAATGTTTG
AGAGAGATGGAGCAACATTATCTGTACTCTTGCCCAGTCTGCTCAAAGTC
TATCTGCGATATGTCCGAATTGTGGAGAAAGCTTGATCAAGAGATTGCCT
CAACCCGGATGCCTGCTGTATACCAAAATAAGATGGTATGGATTCTCTGC
AACGATTGCGGAGCCACTTCCCGTGTCCAGTTCCACATTGTGGCACACAA
ATGCTTGAATTGCGAGTCCTACAATACCAGACAGACACGCGGAGGCCCTG
CTGCTTCATGCTCATCAGTGATGGCCGAGATGGTGAGATGA
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protein sequence of Tc09v2_p029500.2

>Tc09v2_p029500.2 ID=Tc09v2_p029500.2|Name=Tc09v2_p029500.2|organism=Theobroma cacao|type=polypeptide|length=297bp
MEGGRETKLSTDELESVEFGNQNAALMEIGLGNHGCLHYRRRCKIRAPCC
NEIFDCRHCHNEAKNSLECNPLEQHEIPRHEVETVICSLCDTEQDVQQYC
INCGVCMGKYFCAKCKFFDDNVSKNQYHCNECGICRTGGEENFFHCNKCG
CCYSKSMSDAHRCVERAMHHNCPVCFEFLFDTMKDITVLPCGHTMHLECL
REMEQHYLYSCPVCSKSICDMSELWRKLDQEIASTRMPAVYQNKMVWILC
NDCGATSRVQFHIVAHKCLNCESYNTRQTRGGPAASCSSVMAEMVR*
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