Tc09v2_t029120.1

Overview
NameTc09v2_t029120.1
Unique NameTc09v2_t029120.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1329
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productphosphatidylinositol N-acetylglucosaminyltransferase subunit A, transcript variant X2
NoteUDP-Glycosyltransferase superfamily protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590927
GenbankXM_018127761.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g029120Tc09v2_g029120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p029120.1Tc09v2_p029120.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto482475auto482475Theobroma cacaoexon
exon-auto482476auto482476Theobroma cacaoexon
exon-auto482477auto482477Theobroma cacaoexon
exon-auto482478auto482478Theobroma cacaoexon
exon-auto482479auto482479Theobroma cacaoexon
exon-auto482480auto482480Theobroma cacaoexon
exon-auto482481auto482481Theobroma cacaoexon
exon-auto482482auto482482Theobroma cacaoexon
exon-auto482483auto482483Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto482484auto482484Theobroma cacaoCDS
CDS-auto482485auto482485Theobroma cacaoCDS
CDS-auto482486auto482486Theobroma cacaoCDS
CDS-auto482487auto482487Theobroma cacaoCDS
CDS-auto482488auto482488Theobroma cacaoCDS
CDS-auto482489auto482489Theobroma cacaoCDS
CDS-auto482490auto482490Theobroma cacaoCDS
CDS-auto482491auto482491Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t029120.1 ID=Tc09v2_t029120.1|Name=Tc09v2_t029120.1|organism=Theobroma cacao|type=mRNA|length=1329bp
ATGGCTGACCTGAAGCACAGAATTCTTATGGTGTCTGATTTTTTCTATCC
CAACTTTGGTGGTGTTGAGAGTCACATTTATTATCTGTCCCAATGCCTCC
TAAAACTTGGTCACAAGGTGGTTGTTATGACCCATGCTTATGGAAATCGA
TCAGGAGTGAGATACATGACAGGTGGTCTGAAGGTTTATTATGTACCCTG
GCAGCCATTTCTTATGCAGAACACATTGCCGACTTTTTACGGGACATTAC
CAATAATAAGGACTATACTTATTCGGGAAAAGATATCACTTGTGCATGGT
CATCAGGCCTTCTCGACTCTATGTCATGAGGCTTTGATGCATGCGCGCAC
TATGGGATACAAGGTTGTATTTACTGATCATTCTTTGTATGGTTTTGCTG
ATGTGGGAAGCATCCACATGAACAAGGTTCTGCAGTTTACTTTGGCAGAT
GTAACCCGGGCCATTTGTGTTTCTCACACGAGCAAGGAAAATACAGTGCT
ACGGTCAGGTTTGCCACCAGAAAAGGTTTTTGTGATTCCTAATGCTGTGG
ACACCGCTATGTTCAAGCCTGCTCAAGAGCGACTTGGCCATAATGAAATT
GTTATTGTTGTGATAAGTAGATTGGTTTATCGAAAGGGTGCAGATTTGCT
TGTGGAAGTCATTCCAGAAGTTTGCCGCTTGTATCCTAATGTTCGTTTCA
TTGTTGGAGGAGATGGACCTAAACGAGTGAGGTTGGAAGAGATGAGAGAA
AAGCATTCTCTTCAAGATCGAGTTGAGATGTTGGGGGCTGTACCACATGC
TTCTGTACGGTCTGTGCTGATTTCTGGCCACATATTCTTAAACAGTTCTT
TAACAGAAGCTTTTTGCATAGCCATATTGGAGGCTGCAAGTTGTGGATTA
TTAACTGTCAGTACACGTGTTGGAGGAGTCCCAGAGGTTTTACCAGATGA
CATGATAGTACTTGCTGAACCAGATCCTAGTGACATGGTACAAGCAATTA
AGAAGGCAATATCTATCGTTCCTGAGATTGATCCACTAGTTATGCATGAT
CGTATGAAGAGGCTTTATAATTGGAATGATGTTGCAAAAAGGACAGAGAT
AGTGTATAATCGTGCTTTGAAATGTTCTGATCAGAGTCTCCAAGAACGTC
TCTCACGGTATCTTTCATGTGGTGCTTGGGCAGGCAAGCTCTTTTGCTTG
GTTATGATAATCGACTTTTTGCTATGGCGACTTTTGGAACTATGGCAGCC
TGCAAAGGATATTGAGGAGGTGCCTGATGTCGTTCTACCCCGGGATCAAG
ATGGAGAAAACATTGAAGGATTTCGATGA
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protein sequence of Tc09v2_p029120.1

>Tc09v2_p029120.1 ID=Tc09v2_p029120.1|Name=Tc09v2_p029120.1|organism=Theobroma cacao|type=polypeptide|length=443bp
MADLKHRILMVSDFFYPNFGGVESHIYYLSQCLLKLGHKVVVMTHAYGNR
SGVRYMTGGLKVYYVPWQPFLMQNTLPTFYGTLPIIRTILIREKISLVHG
HQAFSTLCHEALMHARTMGYKVVFTDHSLYGFADVGSIHMNKVLQFTLAD
VTRAICVSHTSKENTVLRSGLPPEKVFVIPNAVDTAMFKPAQERLGHNEI
VIVVISRLVYRKGADLLVEVIPEVCRLYPNVRFIVGGDGPKRVRLEEMRE
KHSLQDRVEMLGAVPHASVRSVLISGHIFLNSSLTEAFCIAILEAASCGL
LTVSTRVGGVPEVLPDDMIVLAEPDPSDMVQAIKKAISIVPEIDPLVMHD
RMKRLYNWNDVAKRTEIVYNRALKCSDQSLQERLSRYLSCGAWAGKLFCL
VMIIDFLLWRLLELWQPAKDIEEVPDVVLPRDQDGENIEGFR*
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