Tc09v2_t028280.3

Overview
NameTc09v2_t028280.3
Unique NameTc09v2_t028280.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3141
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productuncharacterized LOC18590831, transcript variant X3
NoteRNA binding family protein, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590831
GenbankXM_018127770.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g028280Tc09v2_g028280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p028280.3Tc09v2_p028280.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto480102auto480102Theobroma cacaoexon
exon-auto480103auto480103Theobroma cacaoexon
exon-auto480104auto480104Theobroma cacaoexon
exon-auto480105auto480105Theobroma cacaoexon
exon-auto480106auto480106Theobroma cacaoexon
exon-auto480107auto480107Theobroma cacaoexon
exon-auto480108auto480108Theobroma cacaoexon
exon-auto480109auto480109Theobroma cacaoexon
exon-auto480110auto480110Theobroma cacaoexon
exon-auto480111auto480111Theobroma cacaoexon
exon-auto480112auto480112Theobroma cacaoexon
exon-auto480113auto480113Theobroma cacaoexon
exon-auto480114auto480114Theobroma cacaoexon
exon-auto480115auto480115Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto480116auto480116Theobroma cacaoCDS
CDS-auto480117auto480117Theobroma cacaoCDS
CDS-auto480118auto480118Theobroma cacaoCDS
CDS-auto480119auto480119Theobroma cacaoCDS
CDS-auto480120auto480120Theobroma cacaoCDS
CDS-auto480121auto480121Theobroma cacaoCDS
CDS-auto480122auto480122Theobroma cacaoCDS
CDS-auto480123auto480123Theobroma cacaoCDS
CDS-auto480124auto480124Theobroma cacaoCDS
CDS-auto480125auto480125Theobroma cacaoCDS
CDS-auto480126auto480126Theobroma cacaoCDS
CDS-auto480127auto480127Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t028280.3 ID=Tc09v2_t028280.3|Name=Tc09v2_t028280.3|organism=Theobroma cacao|type=mRNA|length=3141bp
ATGAGTGACGAGGGAGAAAAGACTTGCCCCCTTTGCGAGGAGGACATGGA
TTTGACTGATCAGCAACTCAAGCCTTGCAAATGTGGTTATGAGATATGTG
TTTGGTGTTGGCATCACATAATGGATATGGCTGAGAAGGATGAGACAGAG
GGACGGTGCCCAGCATGTCGTAGTGCTTATGATAAAGAAAGGATTGTAGG
GATGGCTGCGAATTGTGAGAGGTTGGTTGCTGAAATTAATATGGAGAGAA
AGATGAAGTCACAAAAGGCAAAGACTAAATCTTCTGAAGGAAGGAAGCAA
CTGAGCAGTGTGCGGGTGATTCAAAGGAATCTTGTTTACATAGTTGGGTT
GCCACTTAATCTGGCAGATGAAGATCTTCTCCAGCAGCGAGAATATTTTG
GTCAGTATGGGAAAGTTCTTAAAGTATCTATGTCTCGGACTGCAGCTGGT
GTCATTCAGCAATTTCCAAACAATACATGTAGTGTATATATTACTTATTC
AAAAGAAGAGGAAGCAATTCGTTGTATCCAGTCTGTACATGGGTTTGTCT
TGGATGGTAGACCATTAAAGGCGTGCTTTGGTACAACAAAGTATTGTCAT
GCATGGCTGAGAAATGTGCCTTGCAGCAATCCTGATTGTCTATATTTGCA
CGAGATTGGTTCTCAAGAGGATAGTTTCACAAAAGATGAGATTATATCAG
CATACACAAGGGTTCAACAAATAACCGGTGCAACAAACAATATGCAACGG
CGTGCTGGAAATATGTTACCTCCACCACTGGATGATTATTGCCCCAACAG
TTCTGCATCTGCAGCAAAACCTATTGCTAAAAATGCTCCAAATAATACAA
CAGTGAGCATTCCTAAAGGTTCTCCTCCAAATGGAAGCTCTGTTAGATCT
ATTGCTCTTCCTGCTGGAGCATCATGGGGAATGCGTGCCTTAAACCATCC
ACAAACAGCTGGTTTAGCATGTTCAAATGGACCTTCTAAGCAGAAATCTG
ATATGGTTAGCAGCACATTACCATTTTCATCTGCTGTGGCAAACACAAAT
CAGGTTTCTACATTACATGGTGATGTTATAAAGAAGCCATCTGAGGAAAT
TCATGCTATGCATATGATGGGTAAACCTGATTTGTTAAAACCTTTAAAAG
AAAATGCCAGTTTAGATTGTCGAACTACTCCACTAGAGAAACCTCCTTCA
CCTGATGTAGTTTCTGCTTCTAAATCATTGAGCAGCCAGTTATCTTGTCC
ACCACCATCCAATTATAATGACCAGTGCACTAATATACCATCAAATGTTA
CAAGCTCCACCTTTGACCATGCTGAGCAGTCTTTTATTTCCCCCAGTGAA
AAAGAGGGGAATATTTCCTCTACTGATGGAAAGATACAGAGCTTGTGCTC
GGATATGTCAGCACTGACCTTAGATAGGAATGTCTTGAATGGACTTTCCA
GTTTAGTTAGACCAAGCAGTTCAGCTTCCGATCATGGATCAAGCAGCTCA
CCTGGTAGTCAGGGGTTACAACAACGTTATATTGATCACTATCGAGAACC
TTTAAGTTCACCAGCTGCTGGGAGAGCTGTGACATCTCCCAATGGGGTGT
GTATTTCAAAAGAGCAGTCTGATTGGAGAACTGATATGCAAACTCAAGCA
GTGGCAAATACAAGTTCTGAAGTAGAGGAAGACATATTGTCTTTTGATAA
TCAAAGACTCAAGGATCCTGAAGTCATTAGCCGTTCAAGTTATGTGCCAA
ATTCACCAAGTTCGCTCCATTTATCAAATCATTCTGGGTCCCATTCTTTG
CATCGTAATGAAGGTTTAGGTGCCATTAATTTGAATGCTGATACTCTCTT
TGTAGATAATAAACTTAGTGAGAGTCTACGTTTTCATGGATCTAGTGTTT
CTTCTTTATCAAATGGATACCCTGAGAAGTACATAAGCAGTAGTAGTATT
GGTTCTGATATTATCACAGAAGGCTCCCTTCTGCTTCCAAATGAAGGGAA
AGGGAAGAAGATGGGAAGATTCCTTGGTAATGCTGGGAGCGATGCTGCTA
AAGATACAGGAGAGAGCAGCATAATCTCAAACATATTGTCGCTAGATTTG
GATACATGGGATGAGTCCCTAGCCTCACCTCAGAACTTGGCTAAGTTGTT
TGGTGACACTGACAAGCAGCCCAGTTCTCTCAAATTATCTAGTTCCTGGA
AAGGACAGAATAACAATCAGTCCAGATTCTCCTTTGCGAGACAGGAGGAT
TCTAAATATCATCCATTTGATGTTGAGTCCTCATTTAGTGTCTTTGGGCA
AATGCCAAGGAACCGCTCTTCCAGCCAAGATTTTGCAGAAAGCAGGGATC
TCTATCTAAATAAGTTTGGAATTTCTAATGGTTTTTCTTCCGGTAACTTT
GAGGAATCTGACAATTTTACCAGCAGTCCTTCAGTTTTCTCTTCTAATAA
GCTTTCTGCAGTGTCAAGAGCTCAAATTTCAGCCCCACCTGGATTCTCTG
TTCCTAGCAGGGCACCACCTCCAGGCTTTTCTTCTCATGAGAGAGTAGAC
CATGGTTTTGACACAACATCTGGAATTCATTTGATGGACAATTCCTCCCT
GTTAAGAAATTCTTATCAGGCTCCGGCAAGTGGTGGTATTGGTGGCTCTG
GGGATATAGAATTTGTGGATCCAGCAATTTTGGCAGTTGGTAAGGGTAGT
CTTCAGGGAGGGCTTAACAATTCAGGCTTAGACATGAGATCAAATTTTCC
ACCACAGTTAGGTCCCTATGAAAACGAGGCCAGATTTCAACTATTGATGC
AGAGATCTCTTTCTCCTCATCAGAACCTAAGATATGATGTCGGGGATAGC
TTTTCTTCTCTTAGTGACTCTTATGGAATTTCTTCCAGGCTAATCGATCA
ATCCCAGGTGAACAATATGTCCCCATTTGCACAGTTGTCTCTTCAACAGT
CAAGGAATTCACACATGTCAAATGGTCATTGGGATGGATGGAATGAGGTT
CAGGGTGGAAACAGTCTCGGTGTGGCAGAGCTCCTCAGAAATGATAGATT
GGGATATAACAAGTTTTATTCCAGTTATGAAGGTTCAAAGTACAGGATGC
CCACTTCGGGGGATCTGTATAACAGAACATTCGGGATGTGA
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protein sequence of Tc09v2_p028280.3

>Tc09v2_p028280.3 ID=Tc09v2_p028280.3|Name=Tc09v2_p028280.3|organism=Theobroma cacao|type=polypeptide|length=1047bp
MSDEGEKTCPLCEEDMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETE
GRCPACRSAYDKERIVGMAANCERLVAEINMERKMKSQKAKTKSSEGRKQ
LSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTAAG
VIQQFPNNTCSVYITYSKEEEAIRCIQSVHGFVLDGRPLKACFGTTKYCH
AWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRVQQITGATNNMQR
RAGNMLPPPLDDYCPNSSASAAKPIAKNAPNNTTVSIPKGSPPNGSSVRS
IALPAGASWGMRALNHPQTAGLACSNGPSKQKSDMVSSTLPFSSAVANTN
QVSTLHGDVIKKPSEEIHAMHMMGKPDLLKPLKENASLDCRTTPLEKPPS
PDVVSASKSLSSQLSCPPPSNYNDQCTNIPSNVTSSTFDHAEQSFISPSE
KEGNISSTDGKIQSLCSDMSALTLDRNVLNGLSSLVRPSSSASDHGSSSS
PGSQGLQQRYIDHYREPLSSPAAGRAVTSPNGVCISKEQSDWRTDMQTQA
VANTSSEVEEDILSFDNQRLKDPEVISRSSYVPNSPSSLHLSNHSGSHSL
HRNEGLGAINLNADTLFVDNKLSESLRFHGSSVSSLSNGYPEKYISSSSI
GSDIITEGSLLLPNEGKGKKMGRFLGNAGSDAAKDTGESSIISNILSLDL
DTWDESLASPQNLAKLFGDTDKQPSSLKLSSSWKGQNNNQSRFSFARQED
SKYHPFDVESSFSVFGQMPRNRSSSQDFAESRDLYLNKFGISNGFSSGNF
EESDNFTSSPSVFSSNKLSAVSRAQISAPPGFSVPSRAPPPGFSSHERVD
HGFDTTSGIHLMDNSSLLRNSYQAPASGGIGGSGDIEFVDPAILAVGKGS
LQGGLNNSGLDMRSNFPPQLGPYENEARFQLLMQRSLSPHQNLRYDVGDS
FSSLSDSYGISSRLIDQSQVNNMSPFAQLSLQQSRNSHMSNGHWDGWNEV
QGGNSLGVAELLRNDRLGYNKFYSSYEGSKYRMPTSGDLYNRTFGM*
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