Tc09v2_t028280.1

Overview
NameTc09v2_t028280.1
Unique NameTc09v2_t028280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3063
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productuncharacterized LOC18590831, transcript variant X4
NoteRNA binding family protein, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590831
GenbankXM_018127771.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g028280Tc09v2_g028280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p028280.1Tc09v2_p028280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto480048auto480048Theobroma cacaoexon
exon-auto480049auto480049Theobroma cacaoexon
exon-auto480050auto480050Theobroma cacaoexon
exon-auto480051auto480051Theobroma cacaoexon
exon-auto480052auto480052Theobroma cacaoexon
exon-auto480053auto480053Theobroma cacaoexon
exon-auto480054auto480054Theobroma cacaoexon
exon-auto480055auto480055Theobroma cacaoexon
exon-auto480056auto480056Theobroma cacaoexon
exon-auto480057auto480057Theobroma cacaoexon
exon-auto480058auto480058Theobroma cacaoexon
exon-auto480059auto480059Theobroma cacaoexon
exon-auto480060auto480060Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto480061auto480061Theobroma cacaoCDS
CDS-auto480062auto480062Theobroma cacaoCDS
CDS-auto480063auto480063Theobroma cacaoCDS
CDS-auto480064auto480064Theobroma cacaoCDS
CDS-auto480065auto480065Theobroma cacaoCDS
CDS-auto480066auto480066Theobroma cacaoCDS
CDS-auto480067auto480067Theobroma cacaoCDS
CDS-auto480068auto480068Theobroma cacaoCDS
CDS-auto480069auto480069Theobroma cacaoCDS
CDS-auto480070auto480070Theobroma cacaoCDS
CDS-auto480071auto480071Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t028280.1 ID=Tc09v2_t028280.1|Name=Tc09v2_t028280.1|organism=Theobroma cacao|type=mRNA|length=3063bp
ATGAGTGACGAGGGAGAAAAGACTTGCCCCCTTTGCGAGGAGGACATGGA
TTTGACTGATCAGCAACTCAAGCCTTGCAAATGTGGTTATGAGATATGTG
TTTGGTGTTGGCATCACATAATGGATATGGCTGAGAAGGATGAGACAGAG
GGACGGTGCCCAGCATGTCGTAGTGCTTATGATAAAGAAAGGATTGTAGG
GATGGCTGCGAATTGTGAGAGGTTGGTTGCTGAAATTAATATGGAGAGAA
AGATGAAGTCACAAAAGGCAAAGACTAAATCTTCTGAAGGAAGGAAGCAA
CTGAGCAGTGTGCGGGTGATTCAAAGGAATCTTGTTTACATAGTTGGGTT
GCCACTTAATCTGGCAGATGAAGATCTTCTCCAGCAGCGAGAATATTTTG
GTCAGTATGGGAAAGTTCTTAAAGTATCTATGTCTCGGACTGCAGCTGGT
GTCATTCAGCAATTTCCAAACAATACATGTAGTGTGGCGTGCTTTGGTAC
AACAAAGTATTGTCATGCATGGCTGAGAAATGTGCCTTGCAGCAATCCTG
ATTGTCTATATTTGCACGAGATTGGTTCTCAAGAGGATAGTTTCACAAAA
GATGAGATTATATCAGCATACACAAGGAGTAGGGTTCAACAAATAACCGG
TGCAACAAACAATATGCAACGGCGTGCTGGAAATATGTTACCTCCACCAC
TGGATGATTATTGCCCCAACAGTTCTGCATCTGCAGCAAAACCTATTGCT
AAAAATGCTCCAAATAATACAACAGTGAGCATTCCTAAAGGTTCTCCTCC
AAATGGAAGCTCTGTTAGATCTATTGCTCTTCCTGCTGGAGCATCATGGG
GAATGCGTGCCTTAAACCATCCACAAACAGCTGGTTTAGCATGTTCAAAT
GGACCTTCTAAGCAGAAATCTGATATGGTTAGCAGCACATTACCATTTTC
ATCTGCTGTGGCAAACACAAATCAGGTTTCTACATTACATGGTGATGTTA
TAAAGAAGCCATCTGAGGAAATTCATGCTATGCATATGATGGGTAAACCT
GATTTGTTAAAACCTTTAAAAGAAAATGCCAGTTTAGATTGTCGAACTAC
TCCACTAGAGAAACCTCCTTCACCTGATGTAGTTTCTGCTTCTAAATCAT
TGAGCAGCCAGTTATCTTGTCCACCACCATCCAATTATAATGACCAGTGC
ACTAATATACCATCAAATGTTACAAGCTCCACCTTTGACCATGCTGAGCA
GTCTTTTATTTCCCCCAGTGAAAAAGAGGGGAATATTTCCTCTACTGATG
GAAAGATACAGAGCTTGTGCTCGGATATGTCAGCACTGACCTTAGATAGG
AATGTCTTGAATGGACTTTCCAGTTTAGTTAGACCAAGCAGTTCAGCTTC
CGATCATGGATCAAGCAGCTCACCTGGTAGTCAGGGGTTACAACAACGTT
ATATTGATCACTATCGAGAACCTTTAAGTTCACCAGCTGCTGGGAGAGCT
GTGACATCTCCCAATGGGGTGTGTATTTCAAAAGAGCAGTCTGATTGGAG
AACTGATATGCAAACTCAAGCAGTGGCAAATACAAGTTCTGAAGTAGAGG
AAGACATATTGTCTTTTGATAATCAAAGACTCAAGGATCCTGAAGTCATT
AGCCGTTCAAGTTATGTGCCAAATTCACCAAGTTCGCTCCATTTATCAAA
TCATTCTGGGTCCCATTCTTTGCATCGTAATGAAGGTTTAGGTGCCATTA
ATTTGAATGCTGATACTCTCTTTGTAGATAATAAACTTAGTGAGAGTCTA
CGTTTTCATGGATCTAGTGTTTCTTCTTTATCAAATGGATACCCTGAGAA
GTACATAAGCAGTAGTAGTATTGGTTCTGATATTATCACAGAAGGCTCCC
TTCTGCTTCCAAATGAAGGGAAAGGGAAGAAGATGGGAAGATTCCTTGGT
AATGCTGGGAGCGATGCTGCTAAAGATACAGGAGAGAGCAGCATAATCTC
AAACATATTGTCGCTAGATTTGGATACATGGGATGAGTCCCTAGCCTCAC
CTCAGAACTTGGCTAAGTTGTTTGGTGACACTGACAAGCAGCCCAGTTCT
CTCAAATTATCTAGTTCCTGGAAAGGACAGAATAACAATCAGTCCAGATT
CTCCTTTGCGAGACAGGAGGATTCTAAATATCATCCATTTGATGTTGAGT
CCTCATTTAGTGTCTTTGGGCAAATGCCAAGGAACCGCTCTTCCAGCCAA
GATTTTGCAGAAAGCAGGGATCTCTATCTAAATAAGTTTGGAATTTCTAA
TGGTTTTTCTTCCGGTAACTTTGAGGAATCTGACAATTTTACCAGCAGTC
CTTCAGTTTTCTCTTCTAATAAGCTTTCTGCAGTGTCAAGAGCTCAAATT
TCAGCCCCACCTGGATTCTCTGTTCCTAGCAGGGCACCACCTCCAGGCTT
TTCTTCTCATGAGAGAGTAGACCATGGTTTTGACACAACATCTGGAATTC
ATTTGATGGACAATTCCTCCCTGTTAAGAAATTCTTATCAGGCTCCGGCA
AGTGGTGGTATTGGTGGCTCTGGGGATATAGAATTTGTGGATCCAGCAAT
TTTGGCAGTTGGTAAGGGTAGTCTTCAGGGAGGGCTTAACAATTCAGGCT
TAGACATGAGATCAAATTTTCCACCACAGTTAGGTCCCTATGAAAACGAG
GCCAGATTTCAACTATTGATGCAGAGATCTCTTTCTCCTCATCAGAACCT
AAGATATGATGTCGGGGATAGCTTTTCTTCTCTTAGTGACTCTTATGGAA
TTTCTTCCAGGCTAATCGATCAATCCCAGGTGAACAATATGTCCCCATTT
GCACAGTTGTCTCTTCAACAGTCAAGGAATTCACACATGTCAAATGGTCA
TTGGGATGGATGGAATGAGGTTCAGGGTGGAAACAGTCTCGGTGTGGCAG
AGCTCCTCAGAAATGATAGATTGGGATATAACAAGTTTTATTCCAGTTAT
GAAGGTTCAAAGTACAGGATGCCCACTTCGGGGGATCTGTATAACAGAAC
ATTCGGGATGTGA
back to top

protein sequence of Tc09v2_p028280.1

>Tc09v2_p028280.1 ID=Tc09v2_p028280.1|Name=Tc09v2_p028280.1|organism=Theobroma cacao|type=polypeptide|length=1021bp
MSDEGEKTCPLCEEDMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETE
GRCPACRSAYDKERIVGMAANCERLVAEINMERKMKSQKAKTKSSEGRKQ
LSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTAAG
VIQQFPNNTCSVACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTK
DEIISAYTRSRVQQITGATNNMQRRAGNMLPPPLDDYCPNSSASAAKPIA
KNAPNNTTVSIPKGSPPNGSSVRSIALPAGASWGMRALNHPQTAGLACSN
GPSKQKSDMVSSTLPFSSAVANTNQVSTLHGDVIKKPSEEIHAMHMMGKP
DLLKPLKENASLDCRTTPLEKPPSPDVVSASKSLSSQLSCPPPSNYNDQC
TNIPSNVTSSTFDHAEQSFISPSEKEGNISSTDGKIQSLCSDMSALTLDR
NVLNGLSSLVRPSSSASDHGSSSSPGSQGLQQRYIDHYREPLSSPAAGRA
VTSPNGVCISKEQSDWRTDMQTQAVANTSSEVEEDILSFDNQRLKDPEVI
SRSSYVPNSPSSLHLSNHSGSHSLHRNEGLGAINLNADTLFVDNKLSESL
RFHGSSVSSLSNGYPEKYISSSSIGSDIITEGSLLLPNEGKGKKMGRFLG
NAGSDAAKDTGESSIISNILSLDLDTWDESLASPQNLAKLFGDTDKQPSS
LKLSSSWKGQNNNQSRFSFARQEDSKYHPFDVESSFSVFGQMPRNRSSSQ
DFAESRDLYLNKFGISNGFSSGNFEESDNFTSSPSVFSSNKLSAVSRAQI
SAPPGFSVPSRAPPPGFSSHERVDHGFDTTSGIHLMDNSSLLRNSYQAPA
SGGIGGSGDIEFVDPAILAVGKGSLQGGLNNSGLDMRSNFPPQLGPYENE
ARFQLLMQRSLSPHQNLRYDVGDSFSSLSDSYGISSRLIDQSQVNNMSPF
AQLSLQQSRNSHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSY
EGSKYRMPTSGDLYNRTFGM*
back to top