Tc09v2_t028220.1

Overview
NameTc09v2_t028220.1
Unique NameTc09v2_t028220.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1116
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 102 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productmitogen-activated protein kinase homolog NTF6
NoteMitogen-activated protein kinase homolog NTF6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590823
GenbankXM_007016574.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g028220Tc09v2_g028220Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p028220.1Tc09v2_p028220.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto479785auto479785Theobroma cacaoexon
exon-auto479786auto479786Theobroma cacaoexon
exon-auto479787auto479787Theobroma cacaoexon
exon-auto479788auto479788Theobroma cacaoexon
exon-auto479789auto479789Theobroma cacaoexon
exon-auto479790auto479790Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto479791auto479791Theobroma cacaoCDS
CDS-auto479792auto479792Theobroma cacaoCDS
CDS-auto479793auto479793Theobroma cacaoCDS
CDS-auto479794auto479794Theobroma cacaoCDS
CDS-auto479795auto479795Theobroma cacaoCDS
CDS-auto479796auto479796Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t028220.1 ID=Tc09v2_t028220.1|Name=Tc09v2_t028220.1|organism=Theobroma cacao|type=mRNA|length=1116bp
ATGGAGAACGAAGCAATGGCGGTCGATAGCAGAGGAATCCCAACATATGG
TGGCAGATATGTCCGTTACGACGTATTAGGTATCATCTTTGAGGTTTCTT
CTAAGTACGTCCCTCCTATTCAGCCTATTGGTCGTGGCGCTTATGGCATC
GTTTGTTGTGCCAGGAATTCCGAGACAAATGAAGAGGTTGCGATTAAAAG
AATTGCAAATGCATTTGAGAACAGGATTGATGCTAAAAGAACACTCCGTG
AGATCAAGCTCCTTTGTCACATGGATCATGATAATATTGTCAAAATCAAG
GACATCATACTGCCACCGGAGAGGGAAAAGTTCAATGATGTGTACATTGC
ATATGAGCTAATGGACACTGATCTCAATCAAATAATACGGTCTAGCCAGC
CTCTCACTGATGATCACTATCAGTATTTCCTATATCAACTGTTGCGGGGC
CTGAAGTACATACACTCAGCAAATGTTTTGCACCGAGACCTAAAACCTAG
CAACCTGCTTCTCAATGCAAACTGTGATCTTAAAATTTGTGACTTTGGTC
TTGCAAGAACCACCTCAGAGACAGACTTCATGACAGAGTACGTTGTAACC
AGGTGGTATCGGGCCCCTGAGTTGCTCCTCAACTGTTCAGAGTATACTGC
AGCTATTGATATATGGTCAGTTGGTTGTATTTTGATGGAGATAATTAGAA
GGGAGCCACTTTTTCCTGGTAAAGACTATGTTCAGCAGTTGGGGCTTATT
ACTGAGCTACTAGGATCACCGGAAGATTCAGATCTTGGATTCCTTAGGAG
TGACAATGCTCGAAAGTATGTTAGGCAGCTTCCTCGATTCCCAAAGCGGC
CTTTTGCAGAAAAGTTTCCAGATGTGTCTCCTGTGGCAATTGATCTTGCA
GAGAAAATGCTGGTTTTTGATCCAAGCAAGCGCATCACTGTTGACCAAGC
ACTGAATCACCCATTTTTATCAAGTCTTCATGAGATCAACGAGGAGCCCA
CTTGTCCATCTCCTTTCATCTTTGATTTCGAGCAGACGACCTTGAACGAA
GAAGACATAAAAGAGCTCATATGGAGGGAGTCTTTGAACTTCAATCAAGA
TAAGATGCTCGAATGA
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protein sequence of Tc09v2_p028220.1

>Tc09v2_p028220.1 ID=Tc09v2_p028220.1|Name=Tc09v2_p028220.1|organism=Theobroma cacao|type=polypeptide|length=372bp
MENEAMAVDSRGIPTYGGRYVRYDVLGIIFEVSSKYVPPIQPIGRGAYGI
VCCARNSETNEEVAIKRIANAFENRIDAKRTLREIKLLCHMDHDNIVKIK
DIILPPEREKFNDVYIAYELMDTDLNQIIRSSQPLTDDHYQYFLYQLLRG
LKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVT
RWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLGLI
TELLGSPEDSDLGFLRSDNARKYVRQLPRFPKRPFAEKFPDVSPVAIDLA
EKMLVFDPSKRITVDQALNHPFLSSLHEINEEPTCPSPFIFDFEQTTLNE
EDIKELIWRESLNFNQDKMLE*
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