Tc09v2_t027830.3

Overview
NameTc09v2_t027830.3
Unique NameTc09v2_t027830.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1920
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprobable NOT transcription complex subunit VIP2, transcript variant X4
NoteProbable NOT transcription complex subunit VIP2 (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590778
GenbankXM_007016502.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g027830Tc09v2_g027830Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p027830.3Tc09v2_p027830.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto478941auto478941Theobroma cacaoexon
exon-auto478942auto478942Theobroma cacaoexon
exon-auto478943auto478943Theobroma cacaoexon
exon-auto478944auto478944Theobroma cacaoexon
exon-auto478945auto478945Theobroma cacaoexon
exon-auto478946auto478946Theobroma cacaoexon
exon-auto478947auto478947Theobroma cacaoexon
exon-auto478948auto478948Theobroma cacaoexon
exon-auto478949auto478949Theobroma cacaoexon
exon-auto478950auto478950Theobroma cacaoexon
exon-auto478951auto478951Theobroma cacaoexon
exon-auto478952auto478952Theobroma cacaoexon
exon-auto478953auto478953Theobroma cacaoexon
exon-auto478954auto478954Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto478955auto478955Theobroma cacaoCDS
CDS-auto478956auto478956Theobroma cacaoCDS
CDS-auto478957auto478957Theobroma cacaoCDS
CDS-auto478958auto478958Theobroma cacaoCDS
CDS-auto478959auto478959Theobroma cacaoCDS
CDS-auto478960auto478960Theobroma cacaoCDS
CDS-auto478961auto478961Theobroma cacaoCDS
CDS-auto478962auto478962Theobroma cacaoCDS
CDS-auto478963auto478963Theobroma cacaoCDS
CDS-auto478964auto478964Theobroma cacaoCDS
CDS-auto478965auto478965Theobroma cacaoCDS
CDS-auto478966auto478966Theobroma cacaoCDS
CDS-auto478967auto478967Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t027830.3 ID=Tc09v2_t027830.3|Name=Tc09v2_t027830.3|organism=Theobroma cacao|type=mRNA|length=1920bp
ATGTCGGGGTTACTTAATTCTTCTATCAACGGATCAGCATCAAATCTTCC
AGACAGTAGCGGGCGTTCTTTTGCTACATCTTTCTCTGGTCAGTCTGGTG
CAGCCTCCCCTGTTTTCCATCACACTGGAACTATTCAGGGCCTGCATAAT
ATTCATGGCAGCTTTAATGTTCCCAACATGCCTGGTACGCTTACATCAAG
AAACTCAACATTAAATAATGTTCCGTCTGGTGGGGTTCAACAGCCTACTG
GGAGCCTTTCTGGTGGACGATTTACATCAAATAATCTACCTGTTGCTCTT
TCTCAGTTATCTCATGGCAGCTCCCATGGACATTCAGGAGTAACAAATAG
AGGAGGTATTAGTGTTGTAGGAAACCCTGGATTTAGTAGTAACACAAATG
GAGTTGGTGGTTCTATACCTGGGATTCTGCCAACCTCTGCTGCAATTGGT
AACCGGAATGCAGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGC
AGGTCCTAGGATAACAAGTTCTATGGGAAACATGGTTGGTGGAGGCAACA
TTGGGAGGAGCATAAGCTCTGGAGGAGGATTATCTGTACCTGGTCTTGCA
TCTCGTTTGAATTTAGGTGCCAATAGTGGATCTGGAAGTTTAAGTGTGCA
GGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGGATCTCCTCAGG
TAATTTCGATGCTGGGCAGTTCTTATCCTGCTGCTGGGGGTCCACTTTCC
CAAAGCCATGTTCAAGCTGTGAACAATCTTAGCTCTATGGGAATGCTGAA
TGATGTGAACACAAATGACAATTCCCCTTTTGACATAAATAATGATTTCC
CCCAGTTGACAAGTCGTCCTAGTTCTGCTGGAGGTCCTCAAGGTCAATTG
GGTTCATTACGAAAACAAGGTCTTAGTCCCATTGTTCAACAAAACCAAGA
GTTCAGTATTCAAAATGAAGATTTCCCTGCTTTACCCGGATTTAAAGGTG
GTAATGCTGATTATGCAATGGATTTGCACCAGAAAGAACAACTTCATGAC
AATACCATGTCAATGATGCAATCGCAGCACTTCTCTATGGGGAGATCTGC
AGGGTTTAACTTGGGTGGATCCTATTCATCTCATCGCCCACAGCAGCAAC
AGCAACATGCTCCATCAGCCAGTAGTAGTGGTGTCTCCTTTTCACCTACA
AGCGGACCACCTGGGATTGGGCTAAGACCTCTAAACTCACAAAATACGGT
TTCTGGTATGGGTTATGACCCGATCATCCAACAGTATCAGCAACACCCAA
ACCAGTCCCAGTTTCGACTGCAACAGATATCAGCTGTCAATCAGTCATTT
AGGGAACCGGGCGTGAAATCAATGCAGGCTGCACAGTCTAATCCAGATCC
TTTTGGGTTACTTGGTTTGCTAAGTGTAATTAGGATGAGTGATCCTGATT
TGACTTCCCTTGCTCTTGGAATTGATCTGACAACACTTGGGTTAAATTTG
AATTCCTCGGAAAATCTTCACAAGAATTTTGGTTCTCCATGGTCTGATGA
ACCAGCTAAGGGTGACCCAGAGTTCACAGTGCCACAATGTTATTATGCTA
AGCAACCACCAGCTTTACATCAAGGTTATTTTTCTAAGTTCACAGTGGAC
ACATTATTCTATATCTTTTACAGCATGCCAAAAGACGAAGCTCAATTATA
TGCTGCAAATGAACTTTATAACAGAGGCTGGTTTTACCACAAGGAGCACA
GATTGTGGTTCTTAAGAGTCCCTAATTTGGAGCCACTTGTCAAGACAAAC
ACGTATGAGAGATCTTCTTATCACTGTTTTGATCCAAGCTCATTCGAAAC
AATCCGTAAGGATAATTTTGTTATCCAATACGAGGCGTTGGAAAAGAGAC
CAGCTTTACCTCAACATTAA
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protein sequence of Tc09v2_p027830.3

>Tc09v2_p027830.3 ID=Tc09v2_p027830.3|Name=Tc09v2_p027830.3|organism=Theobroma cacao|type=polypeptide|length=640bp
MSGLLNSSINGSASNLPDSSGRSFATSFSGQSGAASPVFHHTGTIQGLHN
IHGSFNVPNMPGTLTSRNSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVAL
SQLSHGSSHGHSGVTNRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIG
NRNAVPGLGVSPILGNAGPRITSSMGNMVGGGNIGRSISSGGGLSVPGLA
SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSPQVISMLGSSYPAAGGPLS
QSHVQAVNNLSSMGMLNDVNTNDNSPFDINNDFPQLTSRPSSAGGPQGQL
GSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHD
NTMSMMQSQHFSMGRSAGFNLGGSYSSHRPQQQQQHAPSASSSGVSFSPT
SGPPGIGLRPLNSQNTVSGMGYDPIIQQYQQHPNQSQFRLQQISAVNQSF
REPGVKSMQAAQSNPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNL
NSSENLHKNFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVD
TLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFLRVPNLEPLVKTN
TYERSSYHCFDPSSFETIRKDNFVIQYEALEKRPALPQH*
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