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Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns |
Product | probable NOT transcription complex subunit VIP2, transcript variant X4 |
Note | Probable NOT transcription complex subunit VIP2 (Fragment) |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc09v2_t027830.3 ID=Tc09v2_t027830.3|Name=Tc09v2_t027830.3|organism=Theobroma cacao|type=mRNA|length=1920bp ATGTCGGGGTTACTTAATTCTTCTATCAACGGATCAGCATCAAATCTTCC AGACAGTAGCGGGCGTTCTTTTGCTACATCTTTCTCTGGTCAGTCTGGTG CAGCCTCCCCTGTTTTCCATCACACTGGAACTATTCAGGGCCTGCATAAT ATTCATGGCAGCTTTAATGTTCCCAACATGCCTGGTACGCTTACATCAAG AAACTCAACATTAAATAATGTTCCGTCTGGTGGGGTTCAACAGCCTACTG GGAGCCTTTCTGGTGGACGATTTACATCAAATAATCTACCTGTTGCTCTT TCTCAGTTATCTCATGGCAGCTCCCATGGACATTCAGGAGTAACAAATAG AGGAGGTATTAGTGTTGTAGGAAACCCTGGATTTAGTAGTAACACAAATG GAGTTGGTGGTTCTATACCTGGGATTCTGCCAACCTCTGCTGCAATTGGT AACCGGAATGCAGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGC AGGTCCTAGGATAACAAGTTCTATGGGAAACATGGTTGGTGGAGGCAACA TTGGGAGGAGCATAAGCTCTGGAGGAGGATTATCTGTACCTGGTCTTGCA TCTCGTTTGAATTTAGGTGCCAATAGTGGATCTGGAAGTTTAAGTGTGCA GGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGGATCTCCTCAGG TAATTTCGATGCTGGGCAGTTCTTATCCTGCTGCTGGGGGTCCACTTTCC CAAAGCCATGTTCAAGCTGTGAACAATCTTAGCTCTATGGGAATGCTGAA TGATGTGAACACAAATGACAATTCCCCTTTTGACATAAATAATGATTTCC CCCAGTTGACAAGTCGTCCTAGTTCTGCTGGAGGTCCTCAAGGTCAATTG GGTTCATTACGAAAACAAGGTCTTAGTCCCATTGTTCAACAAAACCAAGA GTTCAGTATTCAAAATGAAGATTTCCCTGCTTTACCCGGATTTAAAGGTG GTAATGCTGATTATGCAATGGATTTGCACCAGAAAGAACAACTTCATGAC AATACCATGTCAATGATGCAATCGCAGCACTTCTCTATGGGGAGATCTGC AGGGTTTAACTTGGGTGGATCCTATTCATCTCATCGCCCACAGCAGCAAC AGCAACATGCTCCATCAGCCAGTAGTAGTGGTGTCTCCTTTTCACCTACA AGCGGACCACCTGGGATTGGGCTAAGACCTCTAAACTCACAAAATACGGT TTCTGGTATGGGTTATGACCCGATCATCCAACAGTATCAGCAACACCCAA ACCAGTCCCAGTTTCGACTGCAACAGATATCAGCTGTCAATCAGTCATTT AGGGAACCGGGCGTGAAATCAATGCAGGCTGCACAGTCTAATCCAGATCC TTTTGGGTTACTTGGTTTGCTAAGTGTAATTAGGATGAGTGATCCTGATT TGACTTCCCTTGCTCTTGGAATTGATCTGACAACACTTGGGTTAAATTTG AATTCCTCGGAAAATCTTCACAAGAATTTTGGTTCTCCATGGTCTGATGA ACCAGCTAAGGGTGACCCAGAGTTCACAGTGCCACAATGTTATTATGCTA AGCAACCACCAGCTTTACATCAAGGTTATTTTTCTAAGTTCACAGTGGAC ACATTATTCTATATCTTTTACAGCATGCCAAAAGACGAAGCTCAATTATA TGCTGCAAATGAACTTTATAACAGAGGCTGGTTTTACCACAAGGAGCACA GATTGTGGTTCTTAAGAGTCCCTAATTTGGAGCCACTTGTCAAGACAAAC ACGTATGAGAGATCTTCTTATCACTGTTTTGATCCAAGCTCATTCGAAAC AATCCGTAAGGATAATTTTGTTATCCAATACGAGGCGTTGGAAAAGAGAC CAGCTTTACCTCAACATTAA back to topprotein sequence of Tc09v2_p027830.3 >Tc09v2_p027830.3 ID=Tc09v2_p027830.3|Name=Tc09v2_p027830.3|organism=Theobroma cacao|type=polypeptide|length=640bp
MSGLLNSSINGSASNLPDSSGRSFATSFSGQSGAASPVFHHTGTIQGLHN IHGSFNVPNMPGTLTSRNSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVAL SQLSHGSSHGHSGVTNRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIG NRNAVPGLGVSPILGNAGPRITSSMGNMVGGGNIGRSISSGGGLSVPGLA SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSPQVISMLGSSYPAAGGPLS QSHVQAVNNLSSMGMLNDVNTNDNSPFDINNDFPQLTSRPSSAGGPQGQL GSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHD NTMSMMQSQHFSMGRSAGFNLGGSYSSHRPQQQQQHAPSASSSGVSFSPT SGPPGIGLRPLNSQNTVSGMGYDPIIQQYQQHPNQSQFRLQQISAVNQSF REPGVKSMQAAQSNPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNL NSSENLHKNFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVD TLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFLRVPNLEPLVKTN TYERSSYHCFDPSSFETIRKDNFVIQYEALEKRPALPQH* back to top
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