|
Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns |
Product | probable NOT transcription complex subunit VIP2, transcript variant X3 |
Note | Probable NOT transcription complex subunit VIP2 (Fragment) |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc09v2_t027830.1 ID=Tc09v2_t027830.1|Name=Tc09v2_t027830.1|organism=Theobroma cacao|type=mRNA|length=1956bp ATGTCGGGGTTACTTAATTCTTCTATCAACGGATCAGCATCAAATCTTCC AGACAGTAGCGGGCGTTCTTTTGCTACATCTTTCTCTGGAACTATTCAGG GCCTGCATAATATTCATGGCAGCTTTAATGTTCCCAACATGCCTGGTACG CTTACATCAAGAAACTCAACATTAAATAATGTTCCGTCTGGTGGGGTTCA ACAGCCTACTGGGAGCCTTTCTGGTGGACGATTTACATCAAATAATCTAC CTGTTGCTCTTTCTCAGTTATCTCATGGCAGCTCCCATGGACATTCAGGA GTAACAAATAGAGGAGGTATTAGTGTTGTAGGAAACCCTGGATTTAGTAG TAACACAAATGGAGTTGGTGGTTCTATACCTGGGATTCTGCCAACCTCTG CTGCAATTGGTAACCGGAATGCAGTTCCAGGATTGGGAGTATCCCCAATT TTGGGAAATGCAGGTCCTAGGATAACAAGTTCTATGGGAAACATGGTTGG TGGAGGCAACATTGGGAGGAGCATAAGCTCTGGAGGAGGATTATCTGTAC CTGGTCTTGCATCTCGTTTGAATTTAGGTGCCAATAGTGGATCTGGAAGT TTAAGTGTGCAGGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGG ATCTCCTCAGGTAATTTCGATGCTGGGCAGTTCTTATCCTGCTGCTGGGG GTCCACTTTCCCAAAGCCATGTTCAAGCTGTGAACAATCTTAGCTCTATG GGAATGCTGAATGATGTGAACACAAATGACAATTCCCCTTTTGACATAAA TAATGATTTCCCCCAGTTGACAAGTCGTCCTAGTTCTGCTGGAGGTCCTC AAGGTCAATTGGGTTCATTACGAAAACAAGGTCTTAGTCCCATTGTTCAA CAAAACCAAGAGTTCAGTATTCAAAATGAAGATTTCCCTGCTTTACCCGG ATTTAAAGGTGGTAATGCTGATTATGCAATGGATTTGCACCAGAAAGAAC AACTTCATGACAATACCATGTCAATGATGCAATCGCAGCACTTCTCTATG GGGAGATCTGCAGGGTTTAACTTGGGTGGATCCTATTCATCTCATCGCCC ACAGCAGCAACAGCAACATGCTCCATCAGCCAGTAGTAGTGGTGTCTCCT TTTCACCTGTAAACAACCAAGATCTTCTCCATTTACATGGCTCAGATATT TTCCCATCTTCACATTCGAGCTACCACTCGCAGACAAGCGGACCACCTGG GATTGGGCTAAGACCTCTAAACTCACAAAATACGGTTTCTGGTATGGGTT ATGACCCGATCATCCAACAGTATCAGCAACACCCAAACCAGTCCCAGTTT CGACTGCAACAGATATCAGCTGTCAATCAGTCATTTAGGGAACCGGGCGT GAAATCAATGCAGGCTGCACAGTCTAATCCAGATCCTTTTGGGTTACTTG GTTTGCTAAGTGTAATTAGGATGAGTGATCCTGATTTGACTTCCCTTGCT CTTGGAATTGATCTGACAACACTTGGGTTAAATTTGAATTCCTCGGAAAA TCTTCACAAGAATTTTGGTTCTCCATGGTCTGATGAACCAGCTAAGGGTG ACCCAGAGTTCACAGTGCCACAATGTTATTATGCTAAGCAACCACCAGCT TTACATCAAGGTTATTTTTCTAAGTTCACAGTGGACACATTATTCTATAT CTTTTACAGCATGCCAAAAGACGAAGCTCAATTATATGCTGCAAATGAAC TTTATAACAGAGGCTGGTTTTACCACAAGGAGCACAGATTGTGGTTCTTA AGAGTCCCTAATTTGGAGCCACTTGTCAAGACAAACACGTATGAGAGATC TTCTTATCACTGTTTTGATCCAAGCTCATTCGAAACAATCCGTAAGGATA ATTTTGTTATCCAATACGAGGCGTTGGAAAAGAGACCAGCTTTACCTCAA CATTAA back to topprotein sequence of Tc09v2_p027830.1 >Tc09v2_p027830.1 ID=Tc09v2_p027830.1|Name=Tc09v2_p027830.1|organism=Theobroma cacao|type=polypeptide|length=652bp
MSGLLNSSINGSASNLPDSSGRSFATSFSGTIQGLHNIHGSFNVPNMPGT LTSRNSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVALSQLSHGSSHGHSG VTNRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPI LGNAGPRITSSMGNMVGGGNIGRSISSGGGLSVPGLASRLNLGANSGSGS LSVQGQNRLMSGVLPQGSPQVISMLGSSYPAAGGPLSQSHVQAVNNLSSM GMLNDVNTNDNSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLSPIVQ QNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTMSMMQSQHFSM GRSAGFNLGGSYSSHRPQQQQQHAPSASSSGVSFSPVNNQDLLHLHGSDI FPSSHSSYHSQTSGPPGIGLRPLNSQNTVSGMGYDPIIQQYQQHPNQSQF RLQQISAVNQSFREPGVKSMQAAQSNPDPFGLLGLLSVIRMSDPDLTSLA LGIDLTTLGLNLNSSENLHKNFGSPWSDEPAKGDPEFTVPQCYYAKQPPA LHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFL RVPNLEPLVKTNTYERSSYHCFDPSSFETIRKDNFVIQYEALEKRPALPQ H* back to top
|