Tc09v2_t027830.1

Overview
NameTc09v2_t027830.1
Unique NameTc09v2_t027830.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1956
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprobable NOT transcription complex subunit VIP2, transcript variant X3
NoteProbable NOT transcription complex subunit VIP2 (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590778
GenbankXM_007016501.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g027830Tc09v2_g027830Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p027830.1Tc09v2_p027830.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto478883auto478883Theobroma cacaoexon
exon-auto478884auto478884Theobroma cacaoexon
exon-auto478885auto478885Theobroma cacaoexon
exon-auto478886auto478886Theobroma cacaoexon
exon-auto478887auto478887Theobroma cacaoexon
exon-auto478888auto478888Theobroma cacaoexon
exon-auto478889auto478889Theobroma cacaoexon
exon-auto478890auto478890Theobroma cacaoexon
exon-auto478891auto478891Theobroma cacaoexon
exon-auto478892auto478892Theobroma cacaoexon
exon-auto478893auto478893Theobroma cacaoexon
exon-auto478894auto478894Theobroma cacaoexon
exon-auto478895auto478895Theobroma cacaoexon
exon-auto478896auto478896Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto478897auto478897Theobroma cacaoCDS
CDS-auto478898auto478898Theobroma cacaoCDS
CDS-auto478899auto478899Theobroma cacaoCDS
CDS-auto478900auto478900Theobroma cacaoCDS
CDS-auto478901auto478901Theobroma cacaoCDS
CDS-auto478902auto478902Theobroma cacaoCDS
CDS-auto478903auto478903Theobroma cacaoCDS
CDS-auto478904auto478904Theobroma cacaoCDS
CDS-auto478905auto478905Theobroma cacaoCDS
CDS-auto478906auto478906Theobroma cacaoCDS
CDS-auto478907auto478907Theobroma cacaoCDS
CDS-auto478908auto478908Theobroma cacaoCDS
CDS-auto478909auto478909Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t027830.1 ID=Tc09v2_t027830.1|Name=Tc09v2_t027830.1|organism=Theobroma cacao|type=mRNA|length=1956bp
ATGTCGGGGTTACTTAATTCTTCTATCAACGGATCAGCATCAAATCTTCC
AGACAGTAGCGGGCGTTCTTTTGCTACATCTTTCTCTGGAACTATTCAGG
GCCTGCATAATATTCATGGCAGCTTTAATGTTCCCAACATGCCTGGTACG
CTTACATCAAGAAACTCAACATTAAATAATGTTCCGTCTGGTGGGGTTCA
ACAGCCTACTGGGAGCCTTTCTGGTGGACGATTTACATCAAATAATCTAC
CTGTTGCTCTTTCTCAGTTATCTCATGGCAGCTCCCATGGACATTCAGGA
GTAACAAATAGAGGAGGTATTAGTGTTGTAGGAAACCCTGGATTTAGTAG
TAACACAAATGGAGTTGGTGGTTCTATACCTGGGATTCTGCCAACCTCTG
CTGCAATTGGTAACCGGAATGCAGTTCCAGGATTGGGAGTATCCCCAATT
TTGGGAAATGCAGGTCCTAGGATAACAAGTTCTATGGGAAACATGGTTGG
TGGAGGCAACATTGGGAGGAGCATAAGCTCTGGAGGAGGATTATCTGTAC
CTGGTCTTGCATCTCGTTTGAATTTAGGTGCCAATAGTGGATCTGGAAGT
TTAAGTGTGCAGGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGG
ATCTCCTCAGGTAATTTCGATGCTGGGCAGTTCTTATCCTGCTGCTGGGG
GTCCACTTTCCCAAAGCCATGTTCAAGCTGTGAACAATCTTAGCTCTATG
GGAATGCTGAATGATGTGAACACAAATGACAATTCCCCTTTTGACATAAA
TAATGATTTCCCCCAGTTGACAAGTCGTCCTAGTTCTGCTGGAGGTCCTC
AAGGTCAATTGGGTTCATTACGAAAACAAGGTCTTAGTCCCATTGTTCAA
CAAAACCAAGAGTTCAGTATTCAAAATGAAGATTTCCCTGCTTTACCCGG
ATTTAAAGGTGGTAATGCTGATTATGCAATGGATTTGCACCAGAAAGAAC
AACTTCATGACAATACCATGTCAATGATGCAATCGCAGCACTTCTCTATG
GGGAGATCTGCAGGGTTTAACTTGGGTGGATCCTATTCATCTCATCGCCC
ACAGCAGCAACAGCAACATGCTCCATCAGCCAGTAGTAGTGGTGTCTCCT
TTTCACCTGTAAACAACCAAGATCTTCTCCATTTACATGGCTCAGATATT
TTCCCATCTTCACATTCGAGCTACCACTCGCAGACAAGCGGACCACCTGG
GATTGGGCTAAGACCTCTAAACTCACAAAATACGGTTTCTGGTATGGGTT
ATGACCCGATCATCCAACAGTATCAGCAACACCCAAACCAGTCCCAGTTT
CGACTGCAACAGATATCAGCTGTCAATCAGTCATTTAGGGAACCGGGCGT
GAAATCAATGCAGGCTGCACAGTCTAATCCAGATCCTTTTGGGTTACTTG
GTTTGCTAAGTGTAATTAGGATGAGTGATCCTGATTTGACTTCCCTTGCT
CTTGGAATTGATCTGACAACACTTGGGTTAAATTTGAATTCCTCGGAAAA
TCTTCACAAGAATTTTGGTTCTCCATGGTCTGATGAACCAGCTAAGGGTG
ACCCAGAGTTCACAGTGCCACAATGTTATTATGCTAAGCAACCACCAGCT
TTACATCAAGGTTATTTTTCTAAGTTCACAGTGGACACATTATTCTATAT
CTTTTACAGCATGCCAAAAGACGAAGCTCAATTATATGCTGCAAATGAAC
TTTATAACAGAGGCTGGTTTTACCACAAGGAGCACAGATTGTGGTTCTTA
AGAGTCCCTAATTTGGAGCCACTTGTCAAGACAAACACGTATGAGAGATC
TTCTTATCACTGTTTTGATCCAAGCTCATTCGAAACAATCCGTAAGGATA
ATTTTGTTATCCAATACGAGGCGTTGGAAAAGAGACCAGCTTTACCTCAA
CATTAA
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protein sequence of Tc09v2_p027830.1

>Tc09v2_p027830.1 ID=Tc09v2_p027830.1|Name=Tc09v2_p027830.1|organism=Theobroma cacao|type=polypeptide|length=652bp
MSGLLNSSINGSASNLPDSSGRSFATSFSGTIQGLHNIHGSFNVPNMPGT
LTSRNSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVALSQLSHGSSHGHSG
VTNRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPI
LGNAGPRITSSMGNMVGGGNIGRSISSGGGLSVPGLASRLNLGANSGSGS
LSVQGQNRLMSGVLPQGSPQVISMLGSSYPAAGGPLSQSHVQAVNNLSSM
GMLNDVNTNDNSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLSPIVQ
QNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTMSMMQSQHFSM
GRSAGFNLGGSYSSHRPQQQQQHAPSASSSGVSFSPVNNQDLLHLHGSDI
FPSSHSSYHSQTSGPPGIGLRPLNSQNTVSGMGYDPIIQQYQQHPNQSQF
RLQQISAVNQSFREPGVKSMQAAQSNPDPFGLLGLLSVIRMSDPDLTSLA
LGIDLTTLGLNLNSSENLHKNFGSPWSDEPAKGDPEFTVPQCYYAKQPPA
LHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFL
RVPNLEPLVKTNTYERSSYHCFDPSSFETIRKDNFVIQYEALEKRPALPQ
H*
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