Tc09v2_t027280.1

Overview
NameTc09v2_t027280.1
Unique NameTc09v2_t027280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length501
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 36 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productubiquitin-conjugating enzyme E2 7
NoteUbiquitin-conjugating enzyme E2 7
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590723
GenbankXM_007016409.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g027280Tc09v2_g027280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p027280.1Tc09v2_p027280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto477832auto477832Theobroma cacaoexon
exon-auto477833auto477833Theobroma cacaoexon
exon-auto477834auto477834Theobroma cacaoexon
exon-auto477835auto477835Theobroma cacaoexon
exon-auto477836auto477836Theobroma cacaoexon
exon-auto477837auto477837Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto477838auto477838Theobroma cacaoCDS
CDS-auto477839auto477839Theobroma cacaoCDS
CDS-auto477840auto477840Theobroma cacaoCDS
CDS-auto477841auto477841Theobroma cacaoCDS
CDS-auto477842auto477842Theobroma cacaoCDS
CDS-auto477843auto477843Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t027280.1 ID=Tc09v2_t027280.1|Name=Tc09v2_t027280.1|organism=Theobroma cacao|type=mRNA|length=501bp
ATGGCATCTCAAGCCAGCCTCCTCCTTCAGAAACAGCTCAAAGATCTTTG
TAAGAACCCGGTTGATGGGTTCTCAGCCGGATTGGTTGATGAGACTAATA
TCTTTGAATGGAGTGTTACAATTATTGGACCACCTGATACTCTTTATGAA
GGGGGATTTTTCAATGCCATCATGAGCTTTCCACCTAATTATCCAAACAG
CCCTCCAACAGTGAAATTTACATCAGAGATTTGGCATCCTAATGTTTATC
CAGATGGGCGTGTTTGCATATCAATTCTTCATCCTCCAGGTGATGATCCA
AATGGCTATGAGCTTGCAAGTGAGCGGTGGATGCCAGTACATACAGTTGA
AAGTATTGTTTTGAGTATCATATCAATGCTTTCCAGCCCTAACGACGAAT
CTCCGGCGAATGTTGAAGCTGCAAAGGAATGGAGAGAGAGGAGAGATGAA
TTCAAGAGGAAGGTCAGCCGCTGCGTCAGACGGTCACAAGAAATGTTGTG
A
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protein sequence of Tc09v2_p027280.1

>Tc09v2_p027280.1 ID=Tc09v2_p027280.1|Name=Tc09v2_p027280.1|organism=Theobroma cacao|type=polypeptide|length=167bp
MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYE
GGFFNAIMSFPPNYPNSPPTVKFTSEIWHPNVYPDGRVCISILHPPGDDP
NGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRERRDE
FKRKVSRCVRRSQEML*
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