Tc09v2_t027250.5

Overview
NameTc09v2_t027250.5
Unique NameTc09v2_t027250.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1353
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productinner membrane protein PPF-1, chloroplastic, transcript variant X1
NoteInner membrane protein PPF-1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590719
GenbankXM_018127986.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g027250Tc09v2_g027250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p027250.5Tc09v2_p027250.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto477791auto477791Theobroma cacaoexon
exon-auto477792auto477792Theobroma cacaoexon
exon-auto477793auto477793Theobroma cacaoexon
exon-auto477794auto477794Theobroma cacaoexon
exon-auto477795auto477795Theobroma cacaoexon
exon-auto477796auto477796Theobroma cacaoexon
exon-auto477797auto477797Theobroma cacaoexon
exon-auto477798auto477798Theobroma cacaoexon
exon-auto477799auto477799Theobroma cacaoexon
exon-auto477800auto477800Theobroma cacaoexon
exon-auto477801auto477801Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto477802auto477802Theobroma cacaoCDS
CDS-auto477803auto477803Theobroma cacaoCDS
CDS-auto477804auto477804Theobroma cacaoCDS
CDS-auto477805auto477805Theobroma cacaoCDS
CDS-auto477806auto477806Theobroma cacaoCDS
CDS-auto477807auto477807Theobroma cacaoCDS
CDS-auto477808auto477808Theobroma cacaoCDS
CDS-auto477809auto477809Theobroma cacaoCDS
CDS-auto477810auto477810Theobroma cacaoCDS
CDS-auto477811auto477811Theobroma cacaoCDS
CDS-auto477812auto477812Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t027250.5 ID=Tc09v2_t027250.5|Name=Tc09v2_t027250.5|organism=Theobroma cacao|type=mRNA|length=1353bp
ATGGCGAGAACTCTGATTTCATCACAGCCGTTCATTGGCACTCCGCTTCC
ATGGTCAAAAATTTCTCACCATGGTGGCCTCTACACGCTCCCTCGCCGTA
GACTCGTCTCCACCAGAGTCCGTCTCAGCTTCAACGAAATCCCTCCGAAT
CCCTCCTTCGACTCTTCCTTCGATTTTCAAGCACTTTATACCAAAGCCGA
GAGCCTCCTCTACACTCTCGCCGACGCTGCGGTTGCAGCCGATCCCGCCG
CCGGGTCTATCGACGCCACCCCGCAAAAGAATGGCGGCTGGTTCGGCTTC
ATCTCTGAATCAATGGAATTTGTTCTCAAGGTGTTGAAAGATGGATTATC
AGCGTTACACGTGCCGTACTCGTATGGATTTGCGATTATATTGCTTACGT
TTATAGTTAAGATTGCTACATTTCCTTTGACGAAGCAACAGGTGGAATCA
ACATTAGCTATGCAAAACCTTCAACCAAAAATAAAAGCTATCCAACAAAG
ATATGCAGGCAATCAGGAAAGAATACAACTTGAGACATCTCGTTTGTATA
GGCAAGCTGGGGTTAATCCTTTGGCAGGTTGCTTCCCTACTTTGGCCACT
ATTCCAGTCTGGATAGGCCTGTATCAAGCTCTGTCAAATGTGGCAAATGA
GGGACTGCTTACGGAAGGTTTCTTTTGGATCCCTTCTTTGGGTGGGCCAA
CTACAATTGCTGCTCGACAAAGTGGGTCTGGAATTTCTTGGCTTATTCCA
TTTGTGGATGGCCAACCACCAATCGGATGGCATGACACTGCTGCATACCT
TGTTTTGCCTGTACTCCTTGTTGTCTCTCAATATGTTTCAATGGAGCTCA
TGAAGCCTCCCCAGACGGACGATCCTGCCCAAAAGAACACACTTCTTGTT
TTCAAGTTTCTTCCACTTATGATTGGTTACTTTTCGTTATCTGTTCCATC
AGGATTATCAATTTACTGGTTCACAAATAACGTCCTTAGCACTGCACAAC
AGGTGTGGTTACGCAAGTTAGGTGGTGCAAAACCTGTTGTTGATGAGAGT
GCAAGTGGAATTATAACTGCAGGACGTGCAAAACGATCAGCTGCTCAACC
AGCACGGCCTGGGGATAGGTTCAGACAAACAAAAGAAGAAGAGAAGAAGA
AGAAAGTAAGCAAGGCTCTGCCAGCAGAAGAGGTTCAGACTCTAGATTCT
GCATCTGATTCTGATGAGGAATCAGGTGAAGAGACAAAGGGCAAGGGTGA
CGAGGCTGTCAAAGAAGCATATGCTTCCAGTGCAAGCAAACAGGTTCCTA
ATATTTCTCGGCCAAGACGAAGCAAGAGATCAAAGCGGAAGCGTGCTGTA
TAA
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protein sequence of Tc09v2_p027250.5

>Tc09v2_p027250.5 ID=Tc09v2_p027250.5|Name=Tc09v2_p027250.5|organism=Theobroma cacao|type=polypeptide|length=451bp
MARTLISSQPFIGTPLPWSKISHHGGLYTLPRRRLVSTRVRLSFNEIPPN
PSFDSSFDFQALYTKAESLLYTLADAAVAADPAAGSIDATPQKNGGWFGF
ISESMEFVLKVLKDGLSALHVPYSYGFAIILLTFIVKIATFPLTKQQVES
TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLAT
IPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIP
FVDGQPPIGWHDTAAYLVLPVLLVVSQYVSMELMKPPQTDDPAQKNTLLV
FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVDES
ASGIITAGRAKRSAAQPARPGDRFRQTKEEEKKKKVSKALPAEEVQTLDS
ASDSDEESGEETKGKGDEAVKEAYASSASKQVPNISRPRRSKRSKRKRAV
*
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