Tc09v2_t027250.4

Overview
NameTc09v2_t027250.4
Unique NameTc09v2_t027250.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1353
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productinner membrane protein PPF-1, chloroplastic, transcript variant X4
NoteInner membrane protein PPF-1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590719
GenbankXM_007016402.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g027250Tc09v2_g027250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p027250.4Tc09v2_p027250.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto477766auto477766Theobroma cacaoexon
exon-auto477767auto477767Theobroma cacaoexon
exon-auto477768auto477768Theobroma cacaoexon
exon-auto477769auto477769Theobroma cacaoexon
exon-auto477770auto477770Theobroma cacaoexon
exon-auto477771auto477771Theobroma cacaoexon
exon-auto477772auto477772Theobroma cacaoexon
exon-auto477773auto477773Theobroma cacaoexon
exon-auto477774auto477774Theobroma cacaoexon
exon-auto477775auto477775Theobroma cacaoexon
exon-auto477776auto477776Theobroma cacaoexon
exon-auto477777auto477777Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto477778auto477778Theobroma cacaoCDS
CDS-auto477779auto477779Theobroma cacaoCDS
CDS-auto477780auto477780Theobroma cacaoCDS
CDS-auto477781auto477781Theobroma cacaoCDS
CDS-auto477782auto477782Theobroma cacaoCDS
CDS-auto477783auto477783Theobroma cacaoCDS
CDS-auto477784auto477784Theobroma cacaoCDS
CDS-auto477785auto477785Theobroma cacaoCDS
CDS-auto477786auto477786Theobroma cacaoCDS
CDS-auto477787auto477787Theobroma cacaoCDS
CDS-auto477788auto477788Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t027250.4 ID=Tc09v2_t027250.4|Name=Tc09v2_t027250.4|organism=Theobroma cacao|type=mRNA|length=1353bp
ATGGCGAGAACTCTGATTTCATCACAGCCGTTCATTGGCACTCCGCTTCC
ATGGTCAAAAATTTCTCACCATGGTGGCCTCTACACGCTCCCTCGCCGTA
GACTCGTCTCCACCAGAGTCCGTCTCAGCTTCAACGAAATCCCTCCGAAT
CCCTCCTTCGACTCTTCCTTCGATTTTCAAGCACTTTATACCAAAGCCGA
GAGCCTCCTCTACACTCTCGCCGACGCTGCGGTTGCAGCCGATCCCGCCG
CCGGGTCTATCGACGCCACCCCGCAAAAGAATGGCGGCTGGTTCGGCTTC
ATCTCTGAATCAATGGAATTTGTTCTCAAGGTGTTGAAAGATGGATTATC
AGCGTTACACGTGCCGTACTCGTATGGATTTGCGATTATATTGCTTACGT
TTATAGTTAAGATTGCTACATTTCCTTTGACGAAGCAACAGGTGGAATCA
ACATTAGCTATGCAAAACCTTCAACCAAAAATAAAAGCTATCCAACAAAG
ATATGCAGGCAATCAGGAAAGAATACAACTTGAGACATCTCGTTTGTATA
GGCAAGCTGGGGTTAATCCTTTGGCAGGTTGCTTCCCTACTTTGGCCACT
ATTCCAGTCTGGATAGGCCTGTATCAAGCTCTGTCAAATGTGGCAAATGA
GGGACTGCTTACGGAAGGTTTCTTTTGGATCCCTTCTTTGGGTGGGCCAA
CTACAATTGCTGCTCGACAAAGTGGGTCTGGAATTTCTTGGCTTATTCCA
TTTGTGGATGGCCAACCACCAATCGGATGGCATGACACTGCTGCATACCT
TGTTTTGCCTGTACTCCTTGTTGTCTCTCAATATGTTTCAATGGAGCTCA
TGAAGCCTCCCCAGACGGACGATCCTGCCCAAAAGAACACACTTCTTGTT
TTCAAGTTTCTTCCACTTATGATTGGTTACTTTTCGTTATCTGTTCCATC
AGGATTATCAATTTACTGGTTCACAAATAACGTCCTTAGCACTGCACAAC
AGGTGTGGTTACGCAAGTTAGGTGGTGCAAAACCTGTTGTTGATGAGAGT
GCAAGTGGAATTATAACTGCAGGACGTGCAAAACGATCAGCTGCTCAACC
AGCACGGCCTGGGGATAGGTTCAGACAAACAAAAGAAGAAGAGAAGAAGA
AGAAAGTAAGCAAGGCTCTGCCAGCAGAAGAGGTTCAGACTCTAGATTCT
GCATCTGATTCTGATGAGGAATCAGGTGAAGAGACAAAGGGCAAGGGTGA
CGAGGCTGTCAAAGAAGCATATGCTTCCAGTGCAAGCAAACAGGTTCCTA
ATATTTCTCGGCCAAGACGAAGCAAGAGATCAAAGCGGAAGCGTGCTGTA
TAA
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protein sequence of Tc09v2_p027250.4

>Tc09v2_p027250.4 ID=Tc09v2_p027250.4|Name=Tc09v2_p027250.4|organism=Theobroma cacao|type=polypeptide|length=451bp
MARTLISSQPFIGTPLPWSKISHHGGLYTLPRRRLVSTRVRLSFNEIPPN
PSFDSSFDFQALYTKAESLLYTLADAAVAADPAAGSIDATPQKNGGWFGF
ISESMEFVLKVLKDGLSALHVPYSYGFAIILLTFIVKIATFPLTKQQVES
TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLAT
IPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIP
FVDGQPPIGWHDTAAYLVLPVLLVVSQYVSMELMKPPQTDDPAQKNTLLV
FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVDES
ASGIITAGRAKRSAAQPARPGDRFRQTKEEEKKKKVSKALPAEEVQTLDS
ASDSDEESGEETKGKGDEAVKEAYASSASKQVPNISRPRRSKRSKRKRAV
*
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