Tc09v2_t027250.2

Overview
NameTc09v2_t027250.2
Unique NameTc09v2_t027250.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1353
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productinner membrane protein PPF-1, chloroplastic, transcript variant X5
NoteInner membrane protein PPF-1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590719
GenbankXM_018127989.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g027250Tc09v2_g027250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p027250.2Tc09v2_p027250.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto477716auto477716Theobroma cacaoexon
exon-auto477717auto477717Theobroma cacaoexon
exon-auto477718auto477718Theobroma cacaoexon
exon-auto477719auto477719Theobroma cacaoexon
exon-auto477720auto477720Theobroma cacaoexon
exon-auto477721auto477721Theobroma cacaoexon
exon-auto477722auto477722Theobroma cacaoexon
exon-auto477723auto477723Theobroma cacaoexon
exon-auto477724auto477724Theobroma cacaoexon
exon-auto477725auto477725Theobroma cacaoexon
exon-auto477726auto477726Theobroma cacaoexon
exon-auto477727auto477727Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto477728auto477728Theobroma cacaoCDS
CDS-auto477729auto477729Theobroma cacaoCDS
CDS-auto477730auto477730Theobroma cacaoCDS
CDS-auto477731auto477731Theobroma cacaoCDS
CDS-auto477732auto477732Theobroma cacaoCDS
CDS-auto477733auto477733Theobroma cacaoCDS
CDS-auto477734auto477734Theobroma cacaoCDS
CDS-auto477735auto477735Theobroma cacaoCDS
CDS-auto477736auto477736Theobroma cacaoCDS
CDS-auto477737auto477737Theobroma cacaoCDS
CDS-auto477738auto477738Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t027250.2 ID=Tc09v2_t027250.2|Name=Tc09v2_t027250.2|organism=Theobroma cacao|type=mRNA|length=1353bp
ATGGCGAGAACTCTGATTTCATCACAGCCGTTCATTGGCACTCCGCTTCC
ATGGTCAAAAATTTCTCACCATGGTGGCCTCTACACGCTCCCTCGCCGTA
GACTCGTCTCCACCAGAGTCCGTCTCAGCTTCAACGAAATCCCTCCGAAT
CCCTCCTTCGACTCTTCCTTCGATTTTCAAGCACTTTATACCAAAGCCGA
GAGCCTCCTCTACACTCTCGCCGACGCTGCGGTTGCAGCCGATCCCGCCG
CCGGGTCTATCGACGCCACCCCGCAAAAGAATGGCGGCTGGTTCGGCTTC
ATCTCTGAATCAATGGAATTTGTTCTCAAGGTGTTGAAAGATGGATTATC
AGCGTTACACGTGCCGTACTCGTATGGATTTGCGATTATATTGCTTACGT
TTATAGTTAAGATTGCTACATTTCCTTTGACGAAGCAACAGGTGGAATCA
ACATTAGCTATGCAAAACCTTCAACCAAAAATAAAAGCTATCCAACAAAG
ATATGCAGGCAATCAGGAAAGAATACAACTTGAGACATCTCGTTTGTATA
GGCAAGCTGGGGTTAATCCTTTGGCAGGTTGCTTCCCTACTTTGGCCACT
ATTCCAGTCTGGATAGGCCTGTATCAAGCTCTGTCAAATGTGGCAAATGA
GGGACTGCTTACGGAAGGTTTCTTTTGGATCCCTTCTTTGGGTGGGCCAA
CTACAATTGCTGCTCGACAAAGTGGGTCTGGAATTTCTTGGCTTATTCCA
TTTGTGGATGGCCAACCACCAATCGGATGGCATGACACTGCTGCATACCT
TGTTTTGCCTGTACTCCTTGTTGTCTCTCAATATGTTTCAATGGAGCTCA
TGAAGCCTCCCCAGACGGACGATCCTGCCCAAAAGAACACACTTCTTGTT
TTCAAGTTTCTTCCACTTATGATTGGTTACTTTTCGTTATCTGTTCCATC
AGGATTATCAATTTACTGGTTCACAAATAACGTCCTTAGCACTGCACAAC
AGGTGTGGTTACGCAAGTTAGGTGGTGCAAAACCTGTTGTTGATGAGAGT
GCAAGTGGAATTATAACTGCAGGACGTGCAAAACGATCAGCTGCTCAACC
AGCACGGCCTGGGGATAGGTTCAGACAAACAAAAGAAGAAGAGAAGAAGA
AGAAAGTAAGCAAGGCTCTGCCAGCAGAAGAGGTTCAGACTCTAGATTCT
GCATCTGATTCTGATGAGGAATCAGGTGAAGAGACAAAGGGCAAGGGTGA
CGAGGCTGTCAAAGAAGCATATGCTTCCAGTGCAAGCAAACAGGTTCCTA
ATATTTCTCGGCCAAGACGAAGCAAGAGATCAAAGCGGAAGCGTGCTGTA
TAA
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protein sequence of Tc09v2_p027250.2

>Tc09v2_p027250.2 ID=Tc09v2_p027250.2|Name=Tc09v2_p027250.2|organism=Theobroma cacao|type=polypeptide|length=451bp
MARTLISSQPFIGTPLPWSKISHHGGLYTLPRRRLVSTRVRLSFNEIPPN
PSFDSSFDFQALYTKAESLLYTLADAAVAADPAAGSIDATPQKNGGWFGF
ISESMEFVLKVLKDGLSALHVPYSYGFAIILLTFIVKIATFPLTKQQVES
TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLAT
IPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIP
FVDGQPPIGWHDTAAYLVLPVLLVVSQYVSMELMKPPQTDDPAQKNTLLV
FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVDES
ASGIITAGRAKRSAAQPARPGDRFRQTKEEEKKKKVSKALPAEEVQTLDS
ASDSDEESGEETKGKGDEAVKEAYASSASKQVPNISRPRRSKRSKRKRAV
*
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