Tc09v2_t026390.2

Overview
NameTc09v2_t026390.2
Unique NameTc09v2_t026390.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1266
Properties
Property NameValue
NoteProbable protein phosphatase 2C 24
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable protein phosphatase 2C 24, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590620
GenbankXM_018127016.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g026390Tc09v2_g026390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p026390.2Tc09v2_p026390.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto476155auto476155Theobroma cacaoexon
exon-auto476156auto476156Theobroma cacaoexon
exon-auto476157auto476157Theobroma cacaoexon
exon-auto476158auto476158Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto476159auto476159Theobroma cacaoCDS
CDS-auto476160auto476160Theobroma cacaoCDS
CDS-auto476161auto476161Theobroma cacaoCDS
CDS-auto476162auto476162Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t026390.2 ID=Tc09v2_t026390.2|Name=Tc09v2_t026390.2|organism=Theobroma cacao|type=mRNA|length=1266bp
ATGGCGGAGATCTGCTGCGGAATGGTGAGCGAAGGCGAAGCATCAGCTCC
GTGCGAGCCAAGTTCACGTGCAGCCAGGAAACGTAGAATGGAGATTAGAC
GGATAAAATTCGTCACTGACGTGGCTCCATCAGAGGCTGAGAACGGCCGG
AAACGCCAGAAGCTCCAAATTTACACAGCCTCATTGTCTCTAGACTGTGA
AAACGCTGTTGACAATTCTGTATCCGATGAAGACGGGAATAAACAAAAGG
TAAAAGTTAAAAACGAAAGATCGAAAACGAAAGGAGCGATAGTGAAAAGT
CACTCGAGCCCTGCCCTTTTGTCGCCTGTAACCGATTCAGAGTTATATCC
GAAATTCGGCGTCGCTTCGGTTTGTGGAAGGCGAAGAGACATGGAAGACG
CCGTCGCTATTCACCCGTCGTTTCAGCGCCAAGGCCAGTTCTCTGCGGCC
ACTGGGTTTCACTATTTTGGCGTCTACGATGGCCACGGTTGCTCTCACGT
GGCGATGAGATGCAGAGAGCGGTTACATGAGCTGGTGAAAGAAGAGTTGC
AGGGTGAGGAGGAGGAATGGAAAGGTGCGATGGAGCGTAGCTTCACGCGC
ATGGATAAAGAAGTGATCAAGTGGAACGAGAGCGTGGTTGGAGCTAATTG
CCGTTGCGAGTTACAGTCCCCCGAGTGCGATGCTGTTGGATCTACAGCCG
TTGTCGCTATCGTAACGCCTGATAAGATTATTGTTGCTAACTGTGGTGAT
TCTAGAGCTGTTCTGTGTCGTAACGGCAAGCCCGTTCCTTTATCGTCTGA
TCACAAGCCGGATCGTCCGGATGAGCTGAACCGGATCCAAGCAGCAGGCG
GTCGGGTCATTTATTGGGACGGCCCTCGGGTCCTCGGGGTTCTCGCAATG
TCTCGAGCCATAGGCGATAACTACTTGAAACCTTACGTGAGCTGTGAGCC
GGAGGTTATGATCACGGACCGGGCGGCGGAGGATGATTGTTTGATCCTTG
CGAGCGACGGTTTATGGGATGTTGTGTCGAATGATACCGCGTGCGGGGTG
GCGCGTATGTGTTTGAGGGGGAAGGGTAATCTGCACGCGCCGCCGTCTTC
GCCGGCGGAAGGAGTGGAACGGGAGGCGGTTTTAGGATCCACAATGGGAG
AGATCTCGGACAAGGCGTGCACTGACGCGTCCATGCTGCTGACAAAGCTA
GCGCTGGCCAGGCATAGTACAGACAACGTTAGCGTAGTCGTGGTGGATCT
AAGGCGAGCCACGTAG
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protein sequence of Tc09v2_p026390.2

>Tc09v2_p026390.2 ID=Tc09v2_p026390.2|Name=Tc09v2_p026390.2|organism=Theobroma cacao|type=polypeptide|length=422bp
MAEICCGMVSEGEASAPCEPSSRAARKRRMEIRRIKFVTDVAPSEAENGR
KRQKLQIYTASLSLDCENAVDNSVSDEDGNKQKVKVKNERSKTKGAIVKS
HSSPALLSPVTDSELYPKFGVASVCGRRRDMEDAVAIHPSFQRQGQFSAA
TGFHYFGVYDGHGCSHVAMRCRERLHELVKEELQGEEEEWKGAMERSFTR
MDKEVIKWNESVVGANCRCELQSPECDAVGSTAVVAIVTPDKIIVANCGD
SRAVLCRNGKPVPLSSDHKPDRPDELNRIQAAGGRVIYWDGPRVLGVLAM
SRAIGDNYLKPYVSCEPEVMITDRAAEDDCLILASDGLWDVVSNDTACGV
ARMCLRGKGNLHAPPSSPAEGVEREAVLGSTMGEISDKACTDASMLLTKL
ALARHSTDNVSVVVVDLRRAT*
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