Tc09v2_t025820.1

Overview
NameTc09v2_t025820.1
Unique NameTc09v2_t025820.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2346
Properties
Property NameValue
NoteNeutral ceramidase
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productneutral ceramidase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590562
GenbankXM_007016156.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g025820Tc09v2_g025820Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p025820.1Tc09v2_p025820.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto475436auto475436Theobroma cacaoexon
exon-auto475437auto475437Theobroma cacaoexon
exon-auto475438auto475438Theobroma cacaoexon
exon-auto475439auto475439Theobroma cacaoexon
exon-auto475440auto475440Theobroma cacaoexon
exon-auto475441auto475441Theobroma cacaoexon
exon-auto475442auto475442Theobroma cacaoexon
exon-auto475443auto475443Theobroma cacaoexon
exon-auto475444auto475444Theobroma cacaoexon
exon-auto475445auto475445Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto475446auto475446Theobroma cacaoCDS
CDS-auto475447auto475447Theobroma cacaoCDS
CDS-auto475448auto475448Theobroma cacaoCDS
CDS-auto475449auto475449Theobroma cacaoCDS
CDS-auto475450auto475450Theobroma cacaoCDS
CDS-auto475451auto475451Theobroma cacaoCDS
CDS-auto475452auto475452Theobroma cacaoCDS
CDS-auto475453auto475453Theobroma cacaoCDS
CDS-auto475454auto475454Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t025820.1 ID=Tc09v2_t025820.1|Name=Tc09v2_t025820.1|organism=Theobroma cacao|type=mRNA|length=2346bp
ATGATGGAAGTACTTGCTTCTTTTTGCTGTTATTTTCAAAGTCCTTTGAG
AACTATTTGGTTATGGATATCTCTAGTACTTGTGCTGCAATATAGTAAAA
CAGTACTCTCAGATTCCAACTATTTGATTGGGCTTGGAAGCTATGACATT
ACTGGACCTGCTGCTGATGTTAATATGATGGGATATGCTAACACAGAACA
AATTGCTTCGGGGATTCACTTCAGGCTGCGAGCTCGCTCGTTTATTGTGG
CAGAGCCGCAGGGGAAACGAGTAGTATTTGTTAATCTTGATGCTTGCATG
GCTTCGCAATTAGTGACAATTAAAGTGCTTGAGAGATTGAAAGCAAGATA
TGGGGACTTATATACTGAACAGAATGTTGCTATTAGTGGTATTCATACCC
ACGCGGGTCCTGGGGGTTATCTCCAATATGTGGTGTATCTCGTGACATCT
CTTGGATTTGTTCGTCAGTCATTTGATGTCCTGGTAGATGGCATTGAGAA
AAGTATTATACAAGCTCACGAAAATCTCCGACCTGGATCAATTTTTGTTA
ATAAGGGAGAACTATTAGATGCTGGTGTAAACCGTAGTCCTAGTGCCTAT
CTCAATAACCCTGCATCAGAGCGCAGCAAATATAAGTATGATGTTGATAA
AGAAATGACCCTTTTGAAGTTTGTAGACAACCAGTGGGGTCCAGTGGGTA
CCTTCAACTGGTTTGCAACTCATGGAACATCAATGAGTCGTACAAACTCA
CTGATCAGTGGAGATAACAAAGGTGCAGCAGCACGATTTACAGAAGACTG
GTTTGAGCAGAATGGTATTAAAAGTTCATATATTAATGATTTGGAGACTG
ATGGAATACCTCGAAGAGTCTCAAACATTATCCCAAACCTTCATAATAAT
CACCATGAGTTGCTGGAGCTTGCTGCATCATTCCAGTCTTCTCCTGGTAG
GCCTGCAACCAGGACTCTGAGTGTTGCTAGACGTGTCAGGGGTGCTCTTA
GACAGGCTGATAAGCCTGGATTTGTCTCTGCATTCTGCCAAACAAATTGC
GGTGATGTTAGTCCCAATGTACTCGGAGCATTTTGCTTAGACACTGGCCT
TCCTTGTGACTTCAATCATAGCACCTGTGGTGGAAAGAATGAACTGTGCT
ATGGCCGAGGACCAGGCTATCCTGATGAATTTGAAAGTACACGTATTATT
GGGGAGAGGCAATTCAGAAAAGCTGTGGATCTGTTCAACAAAGCATCTGA
GCAGTTAAAAGGAAAGGTTGACTACCGCCACACTTACCTAGACTTTTCCC
AGCTTGAGGTAACAGTTCCTAAACAGGGAGGAGGTTCTGAGGTAGTTAAA
ACATGTCCTGCTGCAATGGGATTTGCATTTGCTGCAGGAACAACTGATGG
GCCTGGGGCATTTGATTTTAAGCAAGGAGATGACAAGGGTAATCCATTCT
GGAGGCTTGTGCGCAACTTACTTAAAACTCCAGATAAGAAACAAGTTGAT
TGTCAGCATCCAAAGCCCATCTTGCTAGATACTGGTGAAATGAAGCAACC
ATATGATTGGGCGCCTTCAATACTTCCAATCCAGATCTTTCGGATAGGGC
AGCTAGTCATTCTCAGTGTACCTGGAGAATTTACAACAATGTCTGGGAGG
CGTCTTCGTGATGCTGTAAAGACAGTGCTTACTAGCATTGGAAATGGAGA
ATTTGGTAGTAACATTCATGTTGTTATAGCTGGGTTGACTAATACATATT
CACAGTATGTTACAACCTTTGAGGAGTATGAGGTGCAGAGATACGAGGGT
GCCTCCACACTGTATGGTCCACACACACTCAGTGCCTACATTCAGGAGTT
CCAGAAGCTTGCAAGTGCTCTTATCAAAAGTCAACCTGTTGAACCTGGCC
CACAGCCTCCAGATCTTCTAAACAAGCAAATAAGCTTACTCAGTCCTGTT
GTTATGGACTCTACTCCTGCTGGTAAAAACTTTGGGGATGTCAGCTCCGA
TGTTCCTGCTAATTCAACCTTCAAGATCGGTAACACAGTGACTGTTGTCT
TCTGGTCTGCTTGCCCGAGGAACGACCTCATGACAGAGGGTACATTCTCC
CTAGTTGAGATACTCCAAGGGAAGGATACATGGGTCCCAAGATACGACGA
CGATGATTTCTGCCTTCGCTTTAAGTGGTCAAGACCTTCAAAGTTAAGTC
CCCGAAGCCAAGCAACAATAGAATGGACAATCCCACCATCTGCGTCGCCA
GGAGTATACAGAATCAGACATTTTGGGGCTGCGAAAGCACTTTTGGGATC
AATTCGGCATTTCACTGGATCATCTAGTGCTTTCGTGGTAGCATGA
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protein sequence of Tc09v2_p025820.1

>Tc09v2_p025820.1 ID=Tc09v2_p025820.1|Name=Tc09v2_p025820.1|organism=Theobroma cacao|type=polypeptide|length=782bp
MMEVLASFCCYFQSPLRTIWLWISLVLVLQYSKTVLSDSNYLIGLGSYDI
TGPAADVNMMGYANTEQIASGIHFRLRARSFIVAEPQGKRVVFVNLDACM
ASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPGGYLQYVVYLVTS
LGFVRQSFDVLVDGIEKSIIQAHENLRPGSIFVNKGELLDAGVNRSPSAY
LNNPASERSKYKYDVDKEMTLLKFVDNQWGPVGTFNWFATHGTSMSRTNS
LISGDNKGAAARFTEDWFEQNGIKSSYINDLETDGIPRRVSNIIPNLHNN
HHELLELAASFQSSPGRPATRTLSVARRVRGALRQADKPGFVSAFCQTNC
GDVSPNVLGAFCLDTGLPCDFNHSTCGGKNELCYGRGPGYPDEFESTRII
GERQFRKAVDLFNKASEQLKGKVDYRHTYLDFSQLEVTVPKQGGGSEVVK
TCPAAMGFAFAAGTTDGPGAFDFKQGDDKGNPFWRLVRNLLKTPDKKQVD
CQHPKPILLDTGEMKQPYDWAPSILPIQIFRIGQLVILSVPGEFTTMSGR
RLRDAVKTVLTSIGNGEFGSNIHVVIAGLTNTYSQYVTTFEEYEVQRYEG
ASTLYGPHTLSAYIQEFQKLASALIKSQPVEPGPQPPDLLNKQISLLSPV
VMDSTPAGKNFGDVSSDVPANSTFKIGNTVTVVFWSACPRNDLMTEGTFS
LVEILQGKDTWVPRYDDDDFCLRFKWSRPSKLSPRSQATIEWTIPPSASP
GVYRIRHFGAAKALLGSIRHFTGSSSAFVVA*
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