Tc09v2_t025740.3

Overview
NameTc09v2_t025740.3
Unique NameTc09v2_t025740.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length4038
Properties
Property NameValue
NoteDExH-box ATP-dependent RNA helicase DExH11
Model evidenceSupporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH11, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590552
GenbankXM_018127716.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g025740Tc09v2_g025740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p025740.3Tc09v2_p025740.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto475175auto475175Theobroma cacaoexon
exon-auto475176auto475176Theobroma cacaoexon
exon-auto475177auto475177Theobroma cacaoexon
exon-auto475178auto475178Theobroma cacaoexon
exon-auto475179auto475179Theobroma cacaoexon
exon-auto475180auto475180Theobroma cacaoexon
exon-auto475181auto475181Theobroma cacaoexon
exon-auto475182auto475182Theobroma cacaoexon
exon-auto475183auto475183Theobroma cacaoexon
exon-auto475184auto475184Theobroma cacaoexon
exon-auto475185auto475185Theobroma cacaoexon
exon-auto475186auto475186Theobroma cacaoexon
exon-auto475187auto475187Theobroma cacaoexon
exon-auto475188auto475188Theobroma cacaoexon
exon-auto475189auto475189Theobroma cacaoexon
exon-auto475190auto475190Theobroma cacaoexon
exon-auto475191auto475191Theobroma cacaoexon
exon-auto475192auto475192Theobroma cacaoexon
exon-auto475193auto475193Theobroma cacaoexon
exon-auto475194auto475194Theobroma cacaoexon
exon-auto475195auto475195Theobroma cacaoexon
exon-auto475196auto475196Theobroma cacaoexon
exon-auto475197auto475197Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto475198auto475198Theobroma cacaoCDS
CDS-auto475199auto475199Theobroma cacaoCDS
CDS-auto475200auto475200Theobroma cacaoCDS
CDS-auto475201auto475201Theobroma cacaoCDS
CDS-auto475202auto475202Theobroma cacaoCDS
CDS-auto475203auto475203Theobroma cacaoCDS
CDS-auto475204auto475204Theobroma cacaoCDS
CDS-auto475205auto475205Theobroma cacaoCDS
CDS-auto475206auto475206Theobroma cacaoCDS
CDS-auto475207auto475207Theobroma cacaoCDS
CDS-auto475208auto475208Theobroma cacaoCDS
CDS-auto475209auto475209Theobroma cacaoCDS
CDS-auto475210auto475210Theobroma cacaoCDS
CDS-auto475211auto475211Theobroma cacaoCDS
CDS-auto475212auto475212Theobroma cacaoCDS
CDS-auto475213auto475213Theobroma cacaoCDS
CDS-auto475214auto475214Theobroma cacaoCDS
CDS-auto475215auto475215Theobroma cacaoCDS
CDS-auto475216auto475216Theobroma cacaoCDS
CDS-auto475217auto475217Theobroma cacaoCDS
CDS-auto475218auto475218Theobroma cacaoCDS
CDS-auto475219auto475219Theobroma cacaoCDS
CDS-auto475220auto475220Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t025740.3 ID=Tc09v2_t025740.3|Name=Tc09v2_t025740.3|organism=Theobroma cacao|type=mRNA|length=4038bp
ATGAAACCGATCCAAGCAGCAAACGGATTCAGTTTCCGAGTCGGATTCTC
CGGCCACAGCGGCCACCTCAGAGTCGAGCCTCTCTACACCGAGGAGCGCG
ATAACCCTATTAAAACTCTCCCCGACTTTGTTCTCCCACCTGCATTTCCC
AGGGAAACACCGGAATCGATTAAGGAACATATAAAGGAGAAATATCTTTT
GCCAAGATTGGACGATGAAGCTTTTTCTCCAGAAAAAGCTGGAAGGCAAT
GGGATTTTGACTGGTTTGAAAGGGTAAAAATACCATTGGAGCCATCATTG
CCAAGAACTGTTATGGTTCCAGTCTGGGAGTTACCCTTCAGACGGTGCAA
AGGGGGATCAGTTGAAGGAAAGTGGGAACCTAATTCATTGCAGGTGGATG
TATCAGAACTAATAGTTGGGGGTCAAGCTTCTGGTTCTTTTCCACACACG
GTTGGTGGTGCTGCCAAGGATTTTGTAAGAGGAAGCATTAATAACCGACC
TTTTCGTCCAGGAGGCTTGGAGGATCAATCTGTAGAGAGGATTCTTCCGG
ATGGTGCATGTAATGGTGAGTGGGTTAGTGAGGTGCTAAATGGTGGTCCT
GTTCAAACAATTCCTCCAGGCTTTAAGCAAGGGTTAAACCTTGGTGATCT
TACGGCACATCCTTGCTTATGGAATGTTTACAAGGACCGAATTTCACTCA
ATAACACATCAGTTGAAAAGGTGAGTGAGTTGTCTGTACAATTTGACGAC
TTGTTCAAGAAAGCTTGGGAAGAGGATGTTACAGAATTTGAGAAAGATGG
GCATTCAACAGAATCAGATTCTGTTAAGTCAGAAGCTGAGGCGAACCAGG
CTGATGTTCTCAACAGTCTTGATACTGGATCATCTGCTTTGGATGAAATT
TTATCAGTTGAAGCAGAAAGATTAGATGAGAAAAGTGATGGGGGTGGTCA
GCAACAAAAGGAGGCTTGGGCTGTTAGTGGAGGTAGTGAAGGGATTGCTG
ATCACTTTTACGAACTAGTTCCTGACATGGCAATTGAATATCCTTTTGAA
TTGGATACATTCCAGAAGGAGGCTATTTATTATTTGGAAAAGGGGGAGTC
TGTTTTTGTGGCGGCTCATACATCTGCTGGAAAAACAGTTGTTGCAGAAT
ATGCATTTGCTTTGGCGTCAAAACATTGCACTAGAGCTGTGTATACAGCT
CCAATTAAAACAATCAGCAATCAGAAGTATAGAGATTTCTGTGGGAAATT
TGATGTTGGTCTTCTTACTGGTGATGTTAGTTTGAGACCTGAGGCTTCTT
GTCTCATCATGACGACTGAAATATTAAGGTCAATGCTTTATCGGGGTGCG
GATATTATTCGCGATATTGAATGGGTTATATTTGATGAGGTGCACTACGT
GAATGATGTTGAAAGAGGCGTGGTTTGGGAAGAGGTCATAATCATGCTTC
CAAAACATATTAACATCATCCTCCTTTCAGCCACGGTGCCGAATACAATT
GAATTTGCTGATTGGATTGGTCGGACGAAGCAAAAAAAAATTCGTGTCAC
TGGGACAACAAAAAGACCAGTCCCACTGGAGCATTGCCTGTTTTATTCTG
GAGAACTTTACAAAATATGTGAAAGTGAAACTTTTATATCATTGGGACTA
AAGGCTGCCAAAGATGCATACAAGAAAAAGAATTCCAATGCAATTAGTGG
TGGTACTGCTTCGTATACTGGTTCTTCTGCAGTTCATGATGGGGCTCGAG
GTCAGAAACGTGAAATTTCTAACCGAGGGAAACAAAATAAGCATTCTGGT
CCACAAAATTTGGGGCACTATTCTGGGACAGGTTGGGGGAATCAAGGCAG
TGGAGGTGGCCAGAATAGTTGGGGATCTAGGAGATCAGCATGGTTGATGC
TTATTGACAAGCTTTCAAAGCAGTCACTATTACCTGTGGTTATATTTGGT
TTCTCAAAGAACCAATGTGATAAATCAGCTGACAGCATCTCTGGGACTGA
CCTCACTAGTAGTTCTGAGAAAAGTGAGATCCGTGTTTTTTGTGATAAAG
CTTTTTCACGGCTTAAGGGATCTGATCGCAATTTACCTCAGGTTGTCAGA
GTTCAGAACCTTCTTTGCAGAGGAATTGGTGTGCATCATGCAGGTTTGCT
TCCAATTGTCAAGGAAGTTGTTGAAATGCTCTTCTGTCGAGGTGTGATTA
AGGTTTTGTTTTCAACAGAGACATTTGCCATGGGTGTTAATGCTCCAGCC
AGAACGGTTGTCTTTGATACATTAAGGAAGTTTGATGGCAAGGAATTTAG
ACAGTTACTCCCTGGGGAATACACTCAAATGGCAGGTCGTGCTGGCAGAA
GAGGACTTGATAAAACTGGTACAGTTATTGTGATGTGCCGTGATGAAATC
CCAGAAGAGAGGGATTTGAAACATGTTATAACTGGAACTCCAACTAATCT
CGAATCTCAGTTCCGATTGACATACATTATGATCCTACATCTTCTTCGTG
TGGAAGAACTGAAGGTGGAGGACATGTTGAAACGGAGTTTTTCTGAATTT
CATGCTCAGAAGAAACTTCCAGAGCAGCAACAACGTCTATTGCGAAAGCT
TGCACAGCCAAAGAAAACTATAGAATGTATTAAAGGTGAACCTGCAATTG
AAGAGTACTATGAGATGCATGCAGAAGCCGAGGAACACTACCGACAGATA
TCAAATGCTGTCATGCAGTCTCCTGTTGCCCAACAATTTCTTACTGTTGG
GAGAGTGGTTGTGGTGAAATCTCAGTCAGCCCACGACCATTTACTTGGAG
TTGTCGTAAAATCACCTTCTGCCAATAACAAACAATATATTGTGCAAGTT
CTTAAACCTGATGTGCCATTAATGACTCAAACTCCCTCAAGCAGCAGTAA
CTTGCAAGATAAGAGAAGTGCTGACTTCCAACAAGGTTATGTGCTGCTAC
CAAAAGCTAAACGTGGTCTCGAAGAAGACTACCGCTTATCTACTGGTCCA
CGCAAAGGATCAGGTATCATCAACATAAAACTGCCTCACCATGGTGCTGC
TGCAGGAGTGAGTTTTGAGGTCAGAGAAACTGATAATACAGAATTCTTAT
GCATATGCAATAGCAAGATAAAAGTCGAGCAAGTTGGGATTCTTGAATAT
GGTAGCGATACTGCTTTCTCTAACGCAGTTCAGCAGCTGTTGAAATTGAA
ATCTAATGGAAACAAATATCCTCCAGCCTTAGATCCAATTAAAGATCTCA
AATTGAAAGACATGGATCTTGTTCAAAAATACTACAAGTGGACCCACCTA
CTGCAAAAAATGTCAGAGAACAAATGCCACGAATGTATTAAGTTGGAGGA
GCACATTAAGCTAGCTAGAGAGATTAAGAAGCATAAAGATGAAGTTAATG
CTCTTGAATTTCAATTGTCTAATGAAGCGCTCCAACAGATGCCAGAATTT
CAGGGCCGGATTGATGTTCTGAAGGAAATTGGTTGTATAGATGAAGACCA
TGTGGTTCAATTAAAAGGTCGTGTTGCCTGTGAGATGAATTCAGGGGAGG
AATTGATATGCACAGAATGTTTATTTGAGAATCAACTAGATGACCTGGAA
CCTGAAGAAGCGGTGGCTTTAATGTCGGCCTTCGTCTTTCAGCAGAAGAA
CACTTCTGAACCTTCTCTTACATCAAAACTCTCTCAGGCCAAAAAAAGAT
TGTATGACACAGCTATAAAACTTGGTAATCTTCAAGCAGGGTTCAAATTA
CAAATAACACCTGAGGAGTATGCGAAAGAAAATCTCAAGTTTGGTCTTGT
TGAAGTGGTGTACGAATGGGCAAAGGGAACTCCATTTGCAGAAATTTGTG
AGCTCACGGATGTTCCTGAAGGCCTTATAGTGCGGACAATTGTCAGGCTG
GACGAGACTTGTCGTGAATTTAAAAGTGCTGCAGCTATAATGGGTAATTC
ATCACTTTATAAGAAAATGGAATCTGCTTCCAATGCCATAAAGCGTGATA
TCGTCTTTGCTGCTAGTTTGTACATTACAGGAGTGTGA
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protein sequence of Tc09v2_p025740.3

>Tc09v2_p025740.3 ID=Tc09v2_p025740.3|Name=Tc09v2_p025740.3|organism=Theobroma cacao|type=polypeptide|length=1346bp
MKPIQAANGFSFRVGFSGHSGHLRVEPLYTEERDNPIKTLPDFVLPPAFP
RETPESIKEHIKEKYLLPRLDDEAFSPEKAGRQWDFDWFERVKIPLEPSL
PRTVMVPVWELPFRRCKGGSVEGKWEPNSLQVDVSELIVGGQASGSFPHT
VGGAAKDFVRGSINNRPFRPGGLEDQSVERILPDGACNGEWVSEVLNGGP
VQTIPPGFKQGLNLGDLTAHPCLWNVYKDRISLNNTSVEKVSELSVQFDD
LFKKAWEEDVTEFEKDGHSTESDSVKSEAEANQADVLNSLDTGSSALDEI
LSVEAERLDEKSDGGGQQQKEAWAVSGGSEGIADHFYELVPDMAIEYPFE
LDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTA
PIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGA
DIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPKHINIILLSATVPNTI
EFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKICESETFISLGL
KAAKDAYKKKNSNAISGGTASYTGSSAVHDGARGQKREISNRGKQNKHSG
PQNLGHYSGTGWGNQGSGGGQNSWGSRRSAWLMLIDKLSKQSLLPVVIFG
FSKNQCDKSADSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVR
VQNLLCRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPA
RTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVIVMCRDEI
PEERDLKHVITGTPTNLESQFRLTYIMILHLLRVEELKVEDMLKRSFSEF
HAQKKLPEQQQRLLRKLAQPKKTIECIKGEPAIEEYYEMHAEAEEHYRQI
SNAVMQSPVAQQFLTVGRVVVVKSQSAHDHLLGVVVKSPSANNKQYIVQV
LKPDVPLMTQTPSSSSNLQDKRSADFQQGYVLLPKAKRGLEEDYRLSTGP
RKGSGIINIKLPHHGAAAGVSFEVRETDNTEFLCICNSKIKVEQVGILEY
GSDTAFSNAVQQLLKLKSNGNKYPPALDPIKDLKLKDMDLVQKYYKWTHL
LQKMSENKCHECIKLEEHIKLAREIKKHKDEVNALEFQLSNEALQQMPEF
QGRIDVLKEIGCIDEDHVVQLKGRVACEMNSGEELICTECLFENQLDDLE
PEEAVALMSAFVFQQKNTSEPSLTSKLSQAKKRLYDTAIKLGNLQAGFKL
QITPEEYAKENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRL
DETCREFKSAAAIMGNSSLYKKMESASNAIKRDIVFAASLYITGV*
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