Tc09v2_t024300.1

Overview
NameTc09v2_t024300.1
Unique NameTc09v2_t024300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1518
Properties
Property NameValue
NoteProbable 2-carboxy-D-arabinitol-1-phosphatase
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productprobable 2-carboxy-D-arabinitol-1-phosphatase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590390
GenbankXM_018128125.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g024300Tc09v2_g024300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p024300.1Tc09v2_p024300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto471980auto471980Theobroma cacaoexon
exon-auto471981auto471981Theobroma cacaoexon
exon-auto471982auto471982Theobroma cacaoexon
exon-auto471983auto471983Theobroma cacaoexon
exon-auto471984auto471984Theobroma cacaoexon
exon-auto471985auto471985Theobroma cacaoexon
exon-auto471986auto471986Theobroma cacaoexon
exon-auto471987auto471987Theobroma cacaoexon
exon-auto471988auto471988Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto471989auto471989Theobroma cacaoCDS
CDS-auto471990auto471990Theobroma cacaoCDS
CDS-auto471991auto471991Theobroma cacaoCDS
CDS-auto471992auto471992Theobroma cacaoCDS
CDS-auto471993auto471993Theobroma cacaoCDS
CDS-auto471994auto471994Theobroma cacaoCDS
CDS-auto471995auto471995Theobroma cacaoCDS
CDS-auto471996auto471996Theobroma cacaoCDS
CDS-auto471997auto471997Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t024300.1 ID=Tc09v2_t024300.1|Name=Tc09v2_t024300.1|organism=Theobroma cacao|type=mRNA|length=1518bp
ATGATTTCCCTCGCACAAGCTCCTCCGCTTCTCCACGGACGACTCCACCA
TCTCCCTACCAAACGTCGAAGTCCGTTCACCGTCCGATCATCATCGACTC
TCCAAGAGATCAACAAGGCGGAGGAGAGGGAGCTGAGGCCGGAGCTTTAC
GCGTCGGTTCCGTTCCCTCCGATAAAGGCGGCGAAGAGGGTGGTGCTGGT
GAGGCACGGGCAGAGCACGTGGAATGAGGAAGGTAGGATCCAAGGGAGCT
CTAACTTCTCGGTTTTGACTAAGAAAGGTGAAGCTCAAGCCGAGACTTCC
CGCTATATGCTCATCGATGACTCTTTCGATGTTTGCTTCTCCAGCCCTCT
CATTCGTTCAAAAAGAACAGCTGAAATCATATGGGGAATTCGAGAGGAAG
AGATTATAACAGATTCCGATTTGAGAGAAATTGATCTTTATTCATTTCAA
GGCCTCTTAAAGCATGAGGGAAAAGCAAAGTTTGGTCCAGCTTATCGCCA
GTGGCAGGTTGATGCTGCAAATTTCAACATTGATGGTCATTATCCGGTCA
GAGAGTTGTGGGGACGTGCCAGAAATTGCTGGACTAAAATCCTTGCTCAT
GAAAGCAAGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCT
AGTTGCAACAGCAATAGGACTGGGAACAGAATACTTTAGGGTTTTACTTC
AGAGTAATTGTGGTGTAAGTGTGCTTGATTTCACCCCACGGATTGAGGGA
GGGTCTCCATATATCTGTCTTAATCGTTTAAATCAGACACCAAGTTCACC
TGTTGCTACTGGGAGCTCTGGAGGAAGAAAGACCAGCAAGCGGATCATAC
TCATTTGTCAGGGATCCACACAGGATACAGAGCCTAGTTTGTCCAACTCA
GGTGATCAGCCAATGAACATGCTTGGGGTTATACAGGCCCAGAAAAATGC
AGAGTTGCTTCTTGATCTGAAAGTGAGTGCCATAGTTAGCAGCCCATCGA
ATGCCTGTGCTGAGACAGCCACAATTATCTCCAGAGTGCAAGAGGCTGCT
GATTGCTTGGGTGCTGATTGTGTGCCTCGTTATGTAGAGATGAAGAATAT
ACAGGACCTTGATGTTGCAGAAATCCTTCGGCAATCAACAAAGGACACAA
TTGATGTTTCATCTCTACGCCCTGGTTGGTTAAATGGATTAGACGATGGA
GTCATGTCAACACTATGGGAGCAATCTGGGCGAGCCTGGAGTTCGTTGTT
GACAGAACTATCCAACGAATCTGAGAAAGAAAAGATCGTTGTTGCTGTTG
GTCATCCCTCAGTGTACGTAGCAATGATGGGACACTGCCTAAATCTGACA
AAAGAATGGCTAGGATCATTCCATCTTGATGCGGGGAGCGTCAGTGTAGT
AGATTTCCCTGACGGCCCTACTGGTAGAGGCATCATACGGTGCATAAACT
ACACTGCCCATCTAGGGAGATGGTCTATACCAATTACAAGATCAACAGTG
GATGATGAATCGTTTTAA
back to top

protein sequence of Tc09v2_p024300.1

>Tc09v2_p024300.1 ID=Tc09v2_p024300.1|Name=Tc09v2_p024300.1|organism=Theobroma cacao|type=polypeptide|length=506bp
MISLAQAPPLLHGRLHHLPTKRRSPFTVRSSSTLQEINKAEERELRPELY
ASVPFPPIKAAKRVVLVRHGQSTWNEEGRIQGSSNFSVLTKKGEAQAETS
RYMLIDDSFDVCFSSPLIRSKRTAEIIWGIREEEIITDSDLREIDLYSFQ
GLLKHEGKAKFGPAYRQWQVDAANFNIDGHYPVRELWGRARNCWTKILAH
ESKSVLVVAHNAVNQALVATAIGLGTEYFRVLLQSNCGVSVLDFTPRIEG
GSPYICLNRLNQTPSSPVATGSSGGRKTSKRIILICQGSTQDTEPSLSNS
GDQPMNMLGVIQAQKNAELLLDLKVSAIVSSPSNACAETATIISRVQEAA
DCLGADCVPRYVEMKNIQDLDVAEILRQSTKDTIDVSSLRPGWLNGLDDG
VMSTLWEQSGRAWSSLLTELSNESEKEKIVVAVGHPSVYVAMMGHCLNLT
KEWLGSFHLDAGSVSVVDFPDGPTGRGIIRCINYTAHLGRWSIPITRSTV
DDESF*
back to top