Tc09v2_t023970.3

Overview
NameTc09v2_t023970.3
Unique NameTc09v2_t023970.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length501
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Producthistidine-containing phosphotransfer protein 2-like, transcript variant X1
NotePutative Histidine-containing phosphotransfer protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID108663169
GenbankXM_018126549.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g023970Tc09v2_g023970Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p023970.3Tc09v2_p023970.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto471127auto471127Theobroma cacaoexon
exon-auto471128auto471128Theobroma cacaoexon
exon-auto471129auto471129Theobroma cacaoexon
exon-auto471130auto471130Theobroma cacaoexon
exon-auto471131auto471131Theobroma cacaoexon
exon-auto471132auto471132Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto471133auto471133Theobroma cacaoCDS
CDS-auto471134auto471134Theobroma cacaoCDS
CDS-auto471135auto471135Theobroma cacaoCDS
CDS-auto471136auto471136Theobroma cacaoCDS
CDS-auto471137auto471137Theobroma cacaoCDS
CDS-auto471138auto471138Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t023970.3 ID=Tc09v2_t023970.3|Name=Tc09v2_t023970.3|organism=Theobroma cacao|type=mRNA|length=501bp
ATGGCAGTGCCCATCCAGAAAGTTCTCCTTACTGGGTTCATTCACTCCAT
GCATTCTGAGGAAATCGTTGATGACCAATTCTATCAGCCGGAGGCCATCA
AGGACCCCGCCTGTTTATATTGTTGGAGAAGAGGCTGCATCATTAGTCTC
AGTGATCTCCCTAATGTTGATTTTTCTAACTTGGCTGCTCTGGCTACAGA
AATAGAGGAGAGAAGCTCCTGTATTGGTGCTGAGCATGTGAGACTCACAT
GCTTGGATCTTATGCGGGCTTGTGATCAGATGCAAAAGCAGAAGTATGAA
ACTTTCTTCTTCTGTCAGGCCTTGAGTTGGACAAAGAATGAATTCGCTCA
TACCCGTAACAAGTTGCAGGTCCTTGTCCAGTGGTTGTTAAATCTTTCTG
CCTTGGCTGCATCGAATGCAGATGGAGCGGAAGATTATGAGGCTCGAAGC
AAAACAGCAAAAATAGAATGCTATCAAGTAGTATTCTTGAATGTGCAATG
A
back to top

protein sequence of Tc09v2_p023970.3

>Tc09v2_p023970.3 ID=Tc09v2_p023970.3|Name=Tc09v2_p023970.3|organism=Theobroma cacao|type=polypeptide|length=167bp
MAVPIQKVLLTGFIHSMHSEEIVDDQFYQPEAIKDPACLYCWRRGCIISL
SDLPNVDFSNLAALATEIEERSSCIGAEHVRLTCLDLMRACDQMQKQKYE
TFFFCQALSWTKNEFAHTRNKLQVLVQWLLNLSALAASNADGAEDYEARS
KTAKIECYQVVFLNVQ*
back to top