Tc09v2_t023580.1

Overview
NameTc09v2_t023580.1
Unique NameTc09v2_t023580.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length486
Properties
Property NameValue
NoteNuclear factor Y
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductDNA polymerase epsilon subunit 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590310
GenbankXM_007015742.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g023580Tc09v2_g023580Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p023580.1Tc09v2_p023580.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto470375auto470375Theobroma cacaoexon
exon-auto470376auto470376Theobroma cacaoexon
exon-auto470377auto470377Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto470378auto470378Theobroma cacaoCDS
CDS-auto470379auto470379Theobroma cacaoCDS
CDS-auto470380auto470380Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t023580.1 ID=Tc09v2_t023580.1|Name=Tc09v2_t023580.1|organism=Theobroma cacao|type=mRNA|length=486bp
ATGGAGAAAGCGGTACCGGAAGCAGAAGAACTGCCGAAGGCTATCGTGCG
CCGGGTGGTGAAGGATAAGCTTTCCGATTGTTCCCCCGACTACGACATTA
ACGTTCACAAAGACGCCCTCCTCGCTTTCACCGAAAGCGCTCGCATTTTC
ATCCACTACCTTTCCGCCACGGCAAATGATATCTGCAAGGAATCGAGGAG
GCAAACGATAAATGCGGAGGATGTGTTTAAAGCACTGGAAGAAATTGAAT
TCTCGGAATTTGTTAAACCTCTTAGGGCTTCCCTTGCTGAGTTCAGGAGG
AAGAATGCTGGGAAAAAGGGTGGAGCAACAAGGGAAAAAGAAGTGAAGAA
GAAGAGGAAGGTGGAAGAGCCATCTGGCAAGAGTGGAAGTAAAAGCAAAC
AAAATAAAGGGGAGGATGATAATGAAGAAGAAAGAGAAGAAGGAGAAGAA
GAAGCAGAAGAAGATGAGAACAATGGAAATGAGTAA
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protein sequence of Tc09v2_p023580.1

>Tc09v2_p023580.1 ID=Tc09v2_p023580.1|Name=Tc09v2_p023580.1|organism=Theobroma cacao|type=polypeptide|length=162bp
MEKAVPEAEELPKAIVRRVVKDKLSDCSPDYDINVHKDALLAFTESARIF
IHYLSATANDICKESRRQTINAEDVFKALEEIEFSEFVKPLRASLAEFRR
KNAGKKGGATREKEVKKKRKVEEPSGKSGSKSKQNKGEDDNEEEREEGEE
EAEEDENNGNE*
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