Tc09v2_t023200.1

Overview
NameTc09v2_t023200.1
Unique NameTc09v2_t023200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1377
Properties
Property NameValue
NoteRuvB-like protein 1
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductruvB-like protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590271
GenbankXM_018128344.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g023200Tc09v2_g023200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p023200.1Tc09v2_p023200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto469730auto469730Theobroma cacaoexon
exon-auto469731auto469731Theobroma cacaoexon
exon-auto469732auto469732Theobroma cacaoexon
exon-auto469733auto469733Theobroma cacaoexon
exon-auto469734auto469734Theobroma cacaoexon
exon-auto469735auto469735Theobroma cacaoexon
exon-auto469736auto469736Theobroma cacaoexon
exon-auto469737auto469737Theobroma cacaoexon
exon-auto469738auto469738Theobroma cacaoexon
exon-auto469739auto469739Theobroma cacaoexon
exon-auto469740auto469740Theobroma cacaoexon
exon-auto469741auto469741Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto469742auto469742Theobroma cacaoCDS
CDS-auto469743auto469743Theobroma cacaoCDS
CDS-auto469744auto469744Theobroma cacaoCDS
CDS-auto469745auto469745Theobroma cacaoCDS
CDS-auto469746auto469746Theobroma cacaoCDS
CDS-auto469747auto469747Theobroma cacaoCDS
CDS-auto469748auto469748Theobroma cacaoCDS
CDS-auto469749auto469749Theobroma cacaoCDS
CDS-auto469750auto469750Theobroma cacaoCDS
CDS-auto469751auto469751Theobroma cacaoCDS
CDS-auto469752auto469752Theobroma cacaoCDS
CDS-auto469753auto469753Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t023200.1 ID=Tc09v2_t023200.1|Name=Tc09v2_t023200.1|organism=Theobroma cacao|type=mRNA|length=1377bp
ATGGACAAAATGAAGATCGAAGAGGTTCAATCAACGGCCAAAAAACAGAG
AATCGCTACTCACACTCACATCAAAGGCCTTGGTCTCGATGCCAGTGGAA
ATGCCATTCGCCTGGCTGCAGGTTTTGTGGGGCAAGCAGAGGCAAGGGAA
GCAGCTGGTCTTGTGGTGGATATGATAAGACAGAAGAAGATGGCTGGCCG
CGCACTTTTGCTGGCTGGGCCTCCTGGTACTGGGAAAACAGCTTTGGCCC
TTGGAATATCCCAAGAGCTTGGGAGCAAGGTACCATTCTGTCCAATGGTT
GGATCTGAAGTCTACTCATCAGAAGTAAAGAAAACTGAGGTTTTGATGGA
AAATTTCCGACGGGCTATTGGTCTACGTATCAAGGAAAATAAAGAGGTCT
ATGAAGGAGAGGTTACTGAACTCTCTCCTGAAGAAACAGAGAGTGTAACA
GGTGGTTATGGTAAAAGTATTAGCCACGTAATTATTGGATTGAAAACTGT
GAAAGGGACAAAGCAACTGAAGTTGGACCCTACAATTTATGATGCCTTGA
TTAAAGAAAAGGTAGCTGTTGGAGATGTTATATATATTGAAGCAAATAGT
GGAGCAGTTAAAAGGGTGGGCAGAAGTGATGCTTTTGCCACAGAATTTGA
CCTTGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTTCACAAAA
AGAAGGAGATAGTGCAGGATGTAACACTACATGATCTGGACTCTGCCAAT
GCACGGCCGCAAGGTGGGCAAGACATATTGTCTCTAATGGGTCAGATGAT
GAAGCCCAGGAAGACTGAAATCACTGACAAATTACGACAAGAAATAAATA
AGGTAGTTAACCGGTATATTGATGAAGGTGTGGCAGAGCTCGTCCCAGGA
GTTCTATTCATTGATGAGGTGCATATGCTGGACATGGAGTGCTTTTCATA
CTTGAATCGTGCTTTAGAGAGCTCACTATCTCCAATAGTAATTTTTGCTA
CAAATAGGGGAATATGTAACGTAAGGGGGACTGATATGAATAGTCCTCAT
GGCATACCTGTTGACTTATTGGACAGATTGGTGATCATCCGCACACAGAT
TTATGGTCCTGCTGAAATGATACAGATATTAGCAATTCGTGCACAGGTGG
AAGAACTGGTTGTGGATGAAGAAAGTCTAGCATTCCTTGGAGAGATGGGA
CAAAGCACATCTTTAAGGCATGCTGTTCAGCTGTTATCACCTGCTGGCAT
TGTGGCAAAAATGAATGGTCGAGACAGCATTTGCAAGGCGGATCTTGAGG
AAGTGAGCAAGCTATATATAGATGCCAAGTCTTCAGCGAAGATTCTTCAG
GAGCAGCAGGAAAAATTCATTTCATGA
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protein sequence of Tc09v2_p023200.1

>Tc09v2_p023200.1 ID=Tc09v2_p023200.1|Name=Tc09v2_p023200.1|organism=Theobroma cacao|type=polypeptide|length=459bp
MDKMKIEEVQSTAKKQRIATHTHIKGLGLDASGNAIRLAAGFVGQAEARE
AAGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGSKVPFCPMV
GSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESVT
GGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANS
GAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDSAN
ARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPG
VLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMNSPH
GIPVDLLDRLVIIRTQIYGPAEMIQILAIRAQVEELVVDEESLAFLGEMG
QSTSLRHAVQLLSPAGIVAKMNGRDSICKADLEEVSKLYIDAKSSAKILQ
EQQEKFIS*
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