Tc09v2_t022290.2

Overview
NameTc09v2_t022290.2
Unique NameTc09v2_t022290.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1794
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productprobable RNA polymerase II transcription factor B subunit 1-1, transcript variant X1
NoteProbable RNA polymerase II transcription factor B subunit 1-1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590160
GenbankXM_018127428.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g022290Tc09v2_g022290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p022290.2Tc09v2_p022290.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto468309auto468309Theobroma cacaoexon
exon-auto468310auto468310Theobroma cacaoexon
exon-auto468311auto468311Theobroma cacaoexon
exon-auto468312auto468312Theobroma cacaoexon
exon-auto468313auto468313Theobroma cacaoexon
exon-auto468314auto468314Theobroma cacaoexon
exon-auto468315auto468315Theobroma cacaoexon
exon-auto468316auto468316Theobroma cacaoexon
exon-auto468317auto468317Theobroma cacaoexon
exon-auto468318auto468318Theobroma cacaoexon
exon-auto468319auto468319Theobroma cacaoexon
exon-auto468320auto468320Theobroma cacaoexon
exon-auto468321auto468321Theobroma cacaoexon
exon-auto468322auto468322Theobroma cacaoexon
exon-auto468323auto468323Theobroma cacaoexon
exon-auto468324auto468324Theobroma cacaoexon
exon-auto468325auto468325Theobroma cacaoexon
exon-auto468326auto468326Theobroma cacaoexon
exon-auto468327auto468327Theobroma cacaoexon
exon-auto468328auto468328Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto468329auto468329Theobroma cacaoCDS
CDS-auto468330auto468330Theobroma cacaoCDS
CDS-auto468331auto468331Theobroma cacaoCDS
CDS-auto468332auto468332Theobroma cacaoCDS
CDS-auto468333auto468333Theobroma cacaoCDS
CDS-auto468334auto468334Theobroma cacaoCDS
CDS-auto468335auto468335Theobroma cacaoCDS
CDS-auto468336auto468336Theobroma cacaoCDS
CDS-auto468337auto468337Theobroma cacaoCDS
CDS-auto468338auto468338Theobroma cacaoCDS
CDS-auto468339auto468339Theobroma cacaoCDS
CDS-auto468340auto468340Theobroma cacaoCDS
CDS-auto468341auto468341Theobroma cacaoCDS
CDS-auto468342auto468342Theobroma cacaoCDS
CDS-auto468343auto468343Theobroma cacaoCDS
CDS-auto468344auto468344Theobroma cacaoCDS
CDS-auto468345auto468345Theobroma cacaoCDS
CDS-auto468346auto468346Theobroma cacaoCDS
CDS-auto468347auto468347Theobroma cacaoCDS
CDS-auto468348auto468348Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t022290.2 ID=Tc09v2_t022290.2|Name=Tc09v2_t022290.2|organism=Theobroma cacao|type=mRNA|length=1794bp
ATGGCGAGTGGTCACGTGACTAAGCGAGCTAAGTATAAAACCACAATCAA
GGACCCTGGAACTCCCGGTACTCTTAGAATGACACTTGAGAAAATCTTAT
TTGTGCCTCATAATCCTAAGTCAGCTGGAAAGCTTGATGTCGAGTTTCGA
TTCATTAAAGGTCAAAAGCATACGAAGGAGGGATCAAGTAAGCCGCCATG
GCTTAATCTTACAAACAATCAGAATGGGAGTTTCATCTTTGAGTTTGAAA
ATTATTCTGATCTCCAAGATTGTCGAGATTTTGTAGGCAAAGTTCTTGCA
AAGAGTGGAGAAGTTTCTGAAAAACCTACTGTCACATATCCTGATGAACA
ACTCAGTGCAGCTGAAATGGAGCTTCGCATTAAGCTATTACGGGAAGATA
GTGAATTGCAGAAACTTCACAAGCAATTTGTGCTTAGCGGTGTCCTGACA
GAAGCTGAATTTTGGGCAACACGGAAGAAGTTGCTGGATAGAGAGGCCAA
CAAAAAGACAAAGCAGAGGCTGGGTTTCAAAAGTGCAATGATTTCTGACA
TTAAACCATCAACTGATGGTCGGACGAACAAAGTCACATTTAATTTGACC
CCAGAGATCATTCTTCAAATTTTTGCTGAGAAGCCAGCTGTTCACCGTGC
ATTCCTAACTTATGTTCCTAACAAGATGTCAGAACGGGATTTCTGGACCA
AATATTTTAGAGCAGAATACCTACATAGTACGAAAAATAGTGTTGCTGCT
GCAGCAGAGGCTGCTGAAGATGAGGAACTTGCTGTTTTTCTCAAGCAGGA
TGACATATTGGCAAGCGAGTCTCGGTCGAAGATCAGGCGGGTTGACCCAA
CGCTGGACATGGATGCTGATGAGGGGGATGATTATACACATCTTCCCGAT
CATGGAATCTTTCGTGATGGTAGTAAGGAAGTAACTGAATCAGAAAATGA
GCTATACAGAAGAACTCTATCCCAAGATATTAACCGGCATGCTGCAGTTG
TTCTTGAGGGAAGAGCAGTTGATGTGGAGTTGGAAGACACGAGGTCTGTA
GCAGAAGCTCTTGCTCGGTCAAAACAAGAATCATCAACTAAGGGAGAATC
ATATGGGGATACAAGCCGGGAGAGGTTAGATAGGGTATCAAGGATGACTG
AAATAGAAGATCTTCAGGCACCTAATAATCTTCCACTGGCACCACTTTGC
ATTAAGGATCCTCGAGACTATTTTGACTCTCAACAAGTTAATGCACTTAG
AACTTCTGGAGATGAACTTGCTGGAACTGAACAAATAAAATGCAGTTTGA
GCAGCCAGGAGGTGTATGGTTCTTTGAGAGAGTCCATCTCTGTGATCAAA
GCTATGGGGTTGAAGGATCCAATAGTCAAGCCTGAAGTTGCTCATCAAGT
TTTTGATGCTTTGACCCAGAGTATCTCAACTACCAAATATAATATCGGGA
AAAATCCTCAAGAGAGTGTTCTGGACAGATTGCCAAAGAAAATTAAAGAG
GAACTATTGCATCACTGGACATCAATCCTTGAACTGCTCAGACATTTTTG
GGCATCATATCCTATCACCACCAGTTACCTCTATACCAAGGTAAACAGAC
TGAAGGATGCCATGTCACATATCTATCCACAGCTAGAGGAGATTAAGGGA
TCTGTCCCGTCAGACCTTCGGCATCAGGTTTCCCTCCTTATTCGTCCAAT
GCATCAGGCTCTAGATGCTGCGATTCAACATTATGAAGCAGACATGCAGA
AGAGATCTGCGCGAAGTGGAGAGAGACCAAATGGATATGCCTAG
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protein sequence of Tc09v2_p022290.2

>Tc09v2_p022290.2 ID=Tc09v2_p022290.2|Name=Tc09v2_p022290.2|organism=Theobroma cacao|type=polypeptide|length=598bp
MASGHVTKRAKYKTTIKDPGTPGTLRMTLEKILFVPHNPKSAGKLDVEFR
FIKGQKHTKEGSSKPPWLNLTNNQNGSFIFEFENYSDLQDCRDFVGKVLA
KSGEVSEKPTVTYPDEQLSAAEMELRIKLLREDSELQKLHKQFVLSGVLT
EAEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPSTDGRTNKVTFNLT
PEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSVAA
AAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPD
HGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELEDTRSV
AEALARSKQESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLC
IKDPRDYFDSQQVNALRTSGDELAGTEQIKCSLSSQEVYGSLRESISVIK
AMGLKDPIVKPEVAHQVFDALTQSISTTKYNIGKNPQESVLDRLPKKIKE
ELLHHWTSILELLRHFWASYPITTSYLYTKVNRLKDAMSHIYPQLEEIKG
SVPSDLRHQVSLLIRPMHQALDAAIQHYEADMQKRSARSGERPNGYA*
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