Tc09v2_t022120.1

Overview
NameTc09v2_t022120.1
Unique NameTc09v2_t022120.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2466
Properties
Property NameValue
Note5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Product5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590143
GenbankXM_007015499.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g022120Tc09v2_g022120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p022120.1Tc09v2_p022120.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto467766auto467766Theobroma cacaoexon
exon-auto467767auto467767Theobroma cacaoexon
exon-auto467768auto467768Theobroma cacaoexon
exon-auto467769auto467769Theobroma cacaoexon
exon-auto467770auto467770Theobroma cacaoexon
exon-auto467771auto467771Theobroma cacaoexon
exon-auto467772auto467772Theobroma cacaoexon
exon-auto467773auto467773Theobroma cacaoexon
exon-auto467774auto467774Theobroma cacaoexon
exon-auto467775auto467775Theobroma cacaoexon
exon-auto467776auto467776Theobroma cacaoexon
exon-auto467777auto467777Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto467778auto467778Theobroma cacaoCDS
CDS-auto467779auto467779Theobroma cacaoCDS
CDS-auto467780auto467780Theobroma cacaoCDS
CDS-auto467781auto467781Theobroma cacaoCDS
CDS-auto467782auto467782Theobroma cacaoCDS
CDS-auto467783auto467783Theobroma cacaoCDS
CDS-auto467784auto467784Theobroma cacaoCDS
CDS-auto467785auto467785Theobroma cacaoCDS
CDS-auto467786auto467786Theobroma cacaoCDS
CDS-auto467787auto467787Theobroma cacaoCDS
CDS-auto467788auto467788Theobroma cacaoCDS
CDS-auto467789auto467789Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t022120.1 ID=Tc09v2_t022120.1|Name=Tc09v2_t022120.1|organism=Theobroma cacao|type=mRNA|length=2466bp
ATGAGCCACGTCTCTCTTCACTCCCTCGCGCCGTTCTCTTCTGCTTCTCT
CGCCAAAAAACTAGTATCGTTTCCATTTCCTTTGCTTGCCCCTCGCTCTC
TTGCTCTCCCAACACACTCCCCTCCTTCCTATCGCCGCCTCACTCTCCGT
CCTTTCTCTCTTAGAGCAATGGCATCACACATTGTTGGTTACCCTCGGAT
GGGACCCAAGAGGGAGTTAAAGTTTGCATTGGAATCTTTCTGGGATGGTA
AAAGCAGTGCCGAGGAATTGCAGAAGGTGGCGGCAGATCTCAGGTCATCC
ATCTGGAGGCAGATGTCTGAGGCTGGAATCAAGTATATCCCTAGCAACAC
ATTTTCATACTATGATCAAATGTTGGACAACACAGCAATGCTTGGCGCAG
TTCCTCCTAGATATGGTTGGAATGGTGGTGAGATTGGTTTTGATGTTTAT
TTCTCGATGGCTAGGGGTAATGCCTCTGTGCCTGCTATGGAAATGACTAA
GTGGTTTGACACCAACTATCACTACATTGTCCCGGAATTGGGACCAGATG
TCAAGTTCTCCTATGCATCTCACAAGGCTGTTGATGAATACAAGGAGGCC
AAAGCTCTCGGAGTTGACACTGTCCCTGTCCTTATAGGCCCTGTGTCTTA
CTTGTTGCTATCAAAACCAGCAAAGGGGGTGGAGAAATCCTTCTCTCTTC
TTTCCCTAATTGGCAAGATCCTTCCAATTTACAAGGAAGTTGTTGCTGAA
CTAAAGGCAGCTGGTGCAACCTGGATTCAGTTTGATGAGCCCACCCTCGT
ATTGGATCTTGAGTCGCATCAACTGCAAGCATTTACTCATGCCTACTCAG
AGCTAGAATCATCTTTATCTGGCTTGAATGTTCTTATTGAAACTTACTTT
GCTGATGTTCCCGTTGAGACATACAAAAAACTTACTTCATTAAAGGGTGT
AACTGGGTTTGGATTTGATTTGGTTCGTGGAACAAAAACACTTGACTTGA
TAAAGAGTGGATTTCCTTCTGATAAGTACTTGTTTGCTGGAGTAGTTGAT
GGAAGAAACATCTGGGCTAATGATCTTGCCTCTTCACTTAGTACCCTGCA
GGCTCTTGAGGGTATTGTTGGCAAAGAAAAAGTTGTGGTCTCTACATCAT
GCTCTCTTCTCCACACTGCGGTGGACCTTGTGAATGAAACTAAGTTGGAC
AAAGAGCTGAAGTCATGGCTTGCATTTGCAGCACAAAAAATTGTTGAAGT
AAATGCCTTGGCCAAGGCATTGGTTGGGCAAAAGGATGAGGCATTTTTTG
CTTCCAATGCTACAGCTCATGCTTCAAGAAAATCATCTCCTAGAGTGACA
AATGAGGCTGTGCAGAAGGCTGCTGCTGCCTTGAGGGGTTCTGATCACCG
TCGTGCCACAAATGTAAGTGCTAGGCTGGATGCCCAGCAGAAGAAGTTGA
ACCTTCCAATTCTTCCTACCACCACTATCGGATCTTTCCCTCAAACCATG
GACCTTAGAAGAGTGCGTCGTGAGTACAAGGCTAAAAAGATCTCTGAAAC
TGATTATGTCAATGCCATCAAGGAGGAAATCAACAAAGTTGTCAAGCTCC
AGGAAGTGCTTGACATTGATGTTTTGGTACATGGAGAGCCAGAGAGAAAT
GACATGGTTGAGTACTTCGGCGAGCAATTATCTGGTTTTGCCTTTACTGT
GAATGGGTGGGTCCAGTCATATGGATCTCGTTGTGTCAAGCCTCCTATTA
TATTTGGTGATGTGAGCCGCCCCAAGGCCATGACTGTCTTTTGGTCTTCA
ATGGCTCAGAGTATGACTAAACGACCTATGAAAGGAATGCTTACTGGCCC
GGTCACGATTCTGAACTGGTCCTTTGTGAGAAATGACCAGCCAAGGCATG
AAACCTGCTACCAGATTGCCTTGGCCATTAAGGATGAGGTTGAAGATCTT
GAGAGGGCTGGCATTACTGTTATCCAGATTGATGAAGCTGCTTTGAGAGA
GGGTTTACCTCTGAGGAAATCTGAGCAGTCTTTCTATCTGGATTGGGCTG
TTCACTCCTTTAGGATTACTAACTGCGGCGTCAAAGACACTACTCAGATT
CACACCCACATGTGCTACTCGAACTTCAATGACATCATTCACTCGATCAT
AAACATGGATGCTGATGTGATCACCATCGAGAACTCGAGATCAGATGAAA
AGCTTCTATCTGTCTTCCGTGAGGGAGTCAAATATGGTGCCGGGATTGGT
CCTGGTGTGTATGACATTCATTCCCCAAGGATCCCATCTACCGAAGAAGT
TGCTGACCGTATCAACAAGATGCTTGCAGTCCTTGAGTGCAACATTCTGT
GGGTCAATCCTGATTGTGGTCTCAAGACACGCAAGTACACTGAAGTCCAG
CCTGCTCTTAGCAACATGGTTGCTGCTGCCAAGCTCATCCGTACCCAGTT
GGCCGGTGCTAACTAA
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protein sequence of Tc09v2_p022120.1

>Tc09v2_p022120.1 ID=Tc09v2_p022120.1|Name=Tc09v2_p022120.1|organism=Theobroma cacao|type=polypeptide|length=822bp
MSHVSLHSLAPFSSASLAKKLVSFPFPLLAPRSLALPTHSPPSYRRLTLR
PFSLRAMASHIVGYPRMGPKRELKFALESFWDGKSSAEELQKVAADLRSS
IWRQMSEAGIKYIPSNTFSYYDQMLDNTAMLGAVPPRYGWNGGEIGFDVY
FSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVKFSYASHKAVDEYKEA
KALGVDTVPVLIGPVSYLLLSKPAKGVEKSFSLLSLIGKILPIYKEVVAE
LKAAGATWIQFDEPTLVLDLESHQLQAFTHAYSELESSLSGLNVLIETYF
ADVPVETYKKLTSLKGVTGFGFDLVRGTKTLDLIKSGFPSDKYLFAGVVD
GRNIWANDLASSLSTLQALEGIVGKEKVVVSTSCSLLHTAVDLVNETKLD
KELKSWLAFAAQKIVEVNALAKALVGQKDEAFFASNATAHASRKSSPRVT
NEAVQKAAAALRGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTM
DLRRVRREYKAKKISETDYVNAIKEEINKVVKLQEVLDIDVLVHGEPERN
DMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIFGDVSRPKAMTVFWSS
MAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDL
ERAGITVIQIDEAALREGLPLRKSEQSFYLDWAVHSFRITNCGVKDTTQI
HTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIG
PGVYDIHSPRIPSTEEVADRINKMLAVLECNILWVNPDCGLKTRKYTEVQ
PALSNMVAAAKLIRTQLAGAN*
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