Tc09v2_t022000.1

Overview
NameTc09v2_t022000.1
Unique NameTc09v2_t022000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length660
Properties
Property NameValue
NoteZeaxanthin epoxidase, chloroplastic
Model evidenceSupporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productuncharacterized LOC108663446
Cross References
External references for this mRNA
DatabaseAccession
GeneID108663446
GenbankXM_018127480.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g022000Tc09v2_g022000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p022000.1Tc09v2_p022000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto467495auto467495Theobroma cacaoexon
exon-auto467496auto467496Theobroma cacaoexon
exon-auto467497auto467497Theobroma cacaoexon
exon-auto467498auto467498Theobroma cacaoexon
exon-auto467499auto467499Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto467500auto467500Theobroma cacaoCDS
CDS-auto467501auto467501Theobroma cacaoCDS
CDS-auto467502auto467502Theobroma cacaoCDS
CDS-auto467503auto467503Theobroma cacaoCDS
CDS-auto467504auto467504Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t022000.1 ID=Tc09v2_t022000.1|Name=Tc09v2_t022000.1|organism=Theobroma cacao|type=mRNA|length=660bp
ATGGAGATGACTGCACAATCTCTGTCCCAAGCAAAGCTCCCAAGCTGCTC
AACCTCCCTTTCACCACCCTTCCTTCATTCAAAGGCCACTGTTGCTGCAT
CAAATTTTGCAGTTCCATTTCAGTCCTCTAAGAGTTATGTTACTAAGCTA
AAATTTGATAGAATCAGATCAAGGAAACAAAGAAATCTTGGGGTTATTTA
TGCTTCAGAGGGTGAAAGTACTTCAACAGATGTCACTGATAGATGGCTTC
TTGAGCCTGCAGGTGATGGAGATACAAGGCACATAGGTTTTAAGGTTCAG
ATGCCGGATGCCTTTGAAATTGCTTCCAGTGAAGTGACTGTTGGCCGTCT
CCCTGATAAGGCCGATGTGGTGATTCCAGTTGCAACAGTATCTGGAATTC
ATGCACGGATTCAGAAGAAAGAAGGGAATCTTCTGGTCACAGATTTGGAC
AGTACCAATGGAACGTTCATTAATGACCAGAGATTAAGACCAGGAGTCGT
TGCCACTGTGCCACCTGGAAGTTTTCTTATATTCGGGGATATTCATCTGG
CTAAGTTTCGCGTCTCAAAGCTTGAGAATGTTGACACTGAAAGCAAACCA
GAGGAATCTGCTGAGAAATTAGAGACTAATAGTGCTAGTGAGAGTACTCC
AACAGACTAG
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protein sequence of Tc09v2_p022000.1

>Tc09v2_p022000.1 ID=Tc09v2_p022000.1|Name=Tc09v2_p022000.1|organism=Theobroma cacao|type=polypeptide|length=220bp
MEMTAQSLSQAKLPSCSTSLSPPFLHSKATVAASNFAVPFQSSKSYVTKL
KFDRIRSRKQRNLGVIYASEGESTSTDVTDRWLLEPAGDGDTRHIGFKVQ
MPDAFEIASSEVTVGRLPDKADVVIPVATVSGIHARIQKKEGNLLVTDLD
STNGTFINDQRLRPGVVATVPPGSFLIFGDIHLAKFRVSKLENVDTESKP
EESAEKLETNSASESTPTD*
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