Tc09v2_t021590.3

Overview
NameTc09v2_t021590.3
Unique NameTc09v2_t021590.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1263
Properties
Property NameValue
NoteGeneral transcription factor IIH subunit 2
Model evidenceSupporting evidence includes similarity to: 1 mRNA, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productgeneral transcription factor IIH subunit 2, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590083
GenbankXM_007015386.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g021590Tc09v2_g021590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p021590.3Tc09v2_p021590.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto466596auto466596Theobroma cacaoexon
exon-auto466597auto466597Theobroma cacaoexon
exon-auto466598auto466598Theobroma cacaoexon
exon-auto466599auto466599Theobroma cacaoexon
exon-auto466600auto466600Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto466601auto466601Theobroma cacaoCDS
CDS-auto466602auto466602Theobroma cacaoCDS
CDS-auto466603auto466603Theobroma cacaoCDS
CDS-auto466604auto466604Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t021590.3 ID=Tc09v2_t021590.3|Name=Tc09v2_t021590.3|organism=Theobroma cacao|type=mRNA|length=1263bp
ATGAATAATGGAGGGGCAAGACGGATGAATGGTGGAGGCGAAGAGGACGA
TGATGAAGATTATGTGAATGGGGACCTTGATGCGTGGGAGAGAACTTACA
CCGATGAAAGGTCGTGGGAATCTTTGCAAGAGGACGAGTCAGGCCTGCTT
CGACCAATTGACAACAAGGCCCTTTATCATTCTCAGTATCGTCGCCGGCT
TCGGTCCCTTTCTTCCACTGCCACTGCTGCTCGGATCCAAAAGGGCCTCA
TTCGATATCTCTACCTTGTTATTGATCTTTCCCGGGCAGCTTCGGAGACA
GATTTTCGACCAAGTCGTATTGTTGTTATTGCAAAACATGTTGAGGCTTT
CATTAGGGAGTTTTTTGACCAGAATCCTCTTAGTCAAGTTGGCCTTTTGA
CTATCAAAGATGGGGTTGCTCAGTGCTTAACAGATCTCGGGGGTAGTCCT
GAGTCTCATATCAAAGCTTTGATGAATAAGTTGGAATGTTCAGGTGATTC
CTCCTTACAGAATGCATTGGATCTCGTAGATGGGTATCTGAATCAAATTC
CATCATATGGTCATCGTGAAGTTCTTATATTATATTCTGCTCTCAGTACT
TGTGATCCTGGAGATATAATGGAGACCATCCAGAAATGCAAGAAATCTAA
AATAAGGTGTTCAGTTATTGGCCTTGCTGCAGAAATGTTTATATGCAAAC
ATCTCTGCCAGGAAACTGGAGGAACATACTCTGTTGCATTAGATGAGTCC
CACTTTAAAGAGCTAATATTAGAGCATGCACCCCCACCACCAGCCATAGC
AGAATTTGCAACTGCTAATTTGATCAAGATGGGATTCCCTCAAAGAGCGG
CTGAGGGTTCTATATCCATTTGTTCATGTCATAAGGAAGCTAAGGTTGGT
GCAGGGTACACTTGTCCAAGATGCAAAGCACGTGTTTGTGAGCTGCCTAC
AGAATGTTGTATCTGCGGGTTGACACTCGTGTCTTCACCCCATTTGGCTA
GATCATATCATCATCTCTTCCCTATAGCACCATTTGATGAGGTGCCTCCA
TTTAGTTTAAATGATCCAAACCACAAACTGCAAAGAAATTGTTTTGGATG
CCAACAAAGCCTCCTCAACCCAGGAAACAAACCTGGCCTTCTGGTTGTGT
GCCCCAAGTGCAAAGGGTACTTCTGCCTCGACTGTGATATTTATATTCAC
GAGAGTTTGCACAATTGCCCAGGCTGTGACAGCTTCAGGCATTCCAAGGC
AGATAAAGAATGA
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protein sequence of Tc09v2_p021590.3

>Tc09v2_p021590.3 ID=Tc09v2_p021590.3|Name=Tc09v2_p021590.3|organism=Theobroma cacao|type=polypeptide|length=421bp
MNNGGARRMNGGGEEDDDEDYVNGDLDAWERTYTDERSWESLQEDESGLL
RPIDNKALYHSQYRRRLRSLSSTATAARIQKGLIRYLYLVIDLSRAASET
DFRPSRIVVIAKHVEAFIREFFDQNPLSQVGLLTIKDGVAQCLTDLGGSP
ESHIKALMNKLECSGDSSLQNALDLVDGYLNQIPSYGHREVLILYSALST
CDPGDIMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDES
HFKELILEHAPPPPAIAEFATANLIKMGFPQRAAEGSISICSCHKEAKVG
AGYTCPRCKARVCELPTECCICGLTLVSSPHLARSYHHLFPIAPFDEVPP
FSLNDPNHKLQRNCFGCQQSLLNPGNKPGLLVVCPKCKGYFCLDCDIYIH
ESLHNCPGCDSFRHSKADKE*
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