Tc09v2_t021590.2

Overview
NameTc09v2_t021590.2
Unique NameTc09v2_t021590.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1263
Properties
Property NameValue
NoteGeneral transcription factor IIH subunit 2
Model evidenceSupporting evidence includes similarity to: 1 mRNA, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productgeneral transcription factor IIH subunit 2, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590083
GenbankXM_018127441.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g021590Tc09v2_g021590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p021590.2Tc09v2_p021590.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto466585auto466585Theobroma cacaoexon
exon-auto466586auto466586Theobroma cacaoexon
exon-auto466587auto466587Theobroma cacaoexon
exon-auto466588auto466588Theobroma cacaoexon
exon-auto466589auto466589Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto466590auto466590Theobroma cacaoCDS
CDS-auto466591auto466591Theobroma cacaoCDS
CDS-auto466592auto466592Theobroma cacaoCDS
CDS-auto466593auto466593Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t021590.2 ID=Tc09v2_t021590.2|Name=Tc09v2_t021590.2|organism=Theobroma cacao|type=mRNA|length=1263bp
ATGAATAATGGAGGGGCAAGACGGATGAATGGTGGAGGCGAAGAGGACGA
TGATGAAGATTATGTGAATGGGGACCTTGATGCGTGGGAGAGAACTTACA
CCGATGAAAGGTCGTGGGAATCTTTGCAAGAGGACGAGTCAGGCCTGCTT
CGACCAATTGACAACAAGGCCCTTTATCATTCTCAGTATCGTCGCCGGCT
TCGGTCCCTTTCTTCCACTGCCACTGCTGCTCGGATCCAAAAGGGCCTCA
TTCGATATCTCTACCTTGTTATTGATCTTTCCCGGGCAGCTTCGGAGACA
GATTTTCGACCAAGTCGTATTGTTGTTATTGCAAAACATGTTGAGGCTTT
CATTAGGGAGTTTTTTGACCAGAATCCTCTTAGTCAAGTTGGCCTTTTGA
CTATCAAAGATGGGGTTGCTCAGTGCTTAACAGATCTCGGGGGTAGTCCT
GAGTCTCATATCAAAGCTTTGATGAATAAGTTGGAATGTTCAGGTGATTC
CTCCTTACAGAATGCATTGGATCTCGTAGATGGGTATCTGAATCAAATTC
CATCATATGGTCATCGTGAAGTTCTTATATTATATTCTGCTCTCAGTACT
TGTGATCCTGGAGATATAATGGAGACCATCCAGAAATGCAAGAAATCTAA
AATAAGGTGTTCAGTTATTGGCCTTGCTGCAGAAATGTTTATATGCAAAC
ATCTCTGCCAGGAAACTGGAGGAACATACTCTGTTGCATTAGATGAGTCC
CACTTTAAAGAGCTAATATTAGAGCATGCACCCCCACCACCAGCCATAGC
AGAATTTGCAACTGCTAATTTGATCAAGATGGGATTCCCTCAAAGAGCGG
CTGAGGGTTCTATATCCATTTGTTCATGTCATAAGGAAGCTAAGGTTGGT
GCAGGGTACACTTGTCCAAGATGCAAAGCACGTGTTTGTGAGCTGCCTAC
AGAATGTTGTATCTGCGGGTTGACACTCGTGTCTTCACCCCATTTGGCTA
GATCATATCATCATCTCTTCCCTATAGCACCATTTGATGAGGTGCCTCCA
TTTAGTTTAAATGATCCAAACCACAAACTGCAAAGAAATTGTTTTGGATG
CCAACAAAGCCTCCTCAACCCAGGAAACAAACCTGGCCTTCTGGTTGTGT
GCCCCAAGTGCAAAGGGTACTTCTGCCTCGACTGTGATATTTATATTCAC
GAGAGTTTGCACAATTGCCCAGGCTGTGACAGCTTCAGGCATTCCAAGGC
AGATAAAGAATGA
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protein sequence of Tc09v2_p021590.2

>Tc09v2_p021590.2 ID=Tc09v2_p021590.2|Name=Tc09v2_p021590.2|organism=Theobroma cacao|type=polypeptide|length=421bp
MNNGGARRMNGGGEEDDDEDYVNGDLDAWERTYTDERSWESLQEDESGLL
RPIDNKALYHSQYRRRLRSLSSTATAARIQKGLIRYLYLVIDLSRAASET
DFRPSRIVVIAKHVEAFIREFFDQNPLSQVGLLTIKDGVAQCLTDLGGSP
ESHIKALMNKLECSGDSSLQNALDLVDGYLNQIPSYGHREVLILYSALST
CDPGDIMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDES
HFKELILEHAPPPPAIAEFATANLIKMGFPQRAAEGSISICSCHKEAKVG
AGYTCPRCKARVCELPTECCICGLTLVSSPHLARSYHHLFPIAPFDEVPP
FSLNDPNHKLQRNCFGCQQSLLNPGNKPGLLVVCPKCKGYFCLDCDIYIH
ESLHNCPGCDSFRHSKADKE*
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